| The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes J Jacobs, M Atkins, K Davie, H Imrichova, L Romanelli, V Christiaens, ... Nature genetics 50 (7), 1011-1020, 2018 | 136 | 2018 |
| isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation G Urgese, G Paciello, A Acquaviva, E Ficarra BMC bioinformatics 17, 1-13, 2016 | 51 | 2016 |
| Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion model F Abate, A Acquaviva, G Paciello, C Foti, E Ficarra, A Ferrarini, ... Bioinformatics 28 (16), 2114-2121, 2012 | 48 | 2012 |
| Multiscale modeling of cellular actin filaments: From atomistic molecular to coarse‐grained dynamics MA Deriu, A Shkurti, G Paciello, TC Bidone, U Morbiducci, E Ficarra, ... Proteins: Structure, Function, and Bioinformatics 80 (6), 1598-1609, 2012 | 41 | 2012 |
| Novel and rare fusion transcripts involving transcription factors and tumor suppressor genes in acute myeloid leukemia A Padella, G Simonetti, G Paciello, G Giotopoulos, C Baldazzi, S Righi, ... Cancers 11 (12), 1951, 2019 | 21 | 2019 |
| A molecular dynamics study of a miRNA: mRNA interaction G Paciello, A Acquaviva, E Ficarra, MA Deriu, E Macii Journal of molecular modeling 17, 2895-2906, 2011 | 20 | 2011 |
| VDJSeq-Solver: in silico V (D) J recombination detection tool G Paciello, A Acquaviva, C Pighi, A Ferrarini, E Macii, A Zamo’, E Ficarra PLoS One 10 (3), e0118192, 2015 | 15 | 2015 |
| Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimization. G Urgese, G Paciello, A Acquaviva, E Ficarra, M Graziano, M Zamboni IWBBIO, 1347-1358, 2014 | 14 | 2014 |
| FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples G Paciello, E Ficarra BMC bioinformatics 18, 1-12, 2017 | 8 | 2017 |
| FUNGI: FUsioN Gene Integration toolset A Cervera, H Rausio, T Kähkönen, N Andersson, G Partel, V Rantanen, ... Bioinformatics 37 (19), 3353-3355, 2021 | 1 | 2021 |
| MDM2 and Aurora Kinase a Contribute to SETD2 Loss of Function in Advanced Systemic Mastocytosis: Implications for Pathogenesis and Treatment M Mancini, C Monaldi, S De Santis, C Papayannidis, M Rondoni, ... Blood 132, 1779, 2018 | 1 | 2018 |
| The genomic and transcriptomic landscape of systemic mastocytosis S Soverini, C De Benedittis, M Rondoni, C Papayannidis, E Ficarra, ... Blood 128 (22), 3136, 2016 | 1 | 2016 |
| RNA sequencing reveals novel and rare fusion transcripts in acute myeloid leukemia A Padella, G Simonetti, G Paciello, A Ferrari, E Zago, C Baldazzi, ... Blood 126 (23), 3627, 2015 | 1 | 2015 |
| miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction. G Urgese, G Paciello, C Isella, E Medico, E Macii, E Ficarra, A Acquaviva IWBBIO, 1015-1026, 2014 | 1 | 2014 |
| PS1437 SETD2 NON-GENOMIC LOSS OF FUNCTION IN ADVANCED SYSTEMIC MASTOCYTOSIS (SM): PATHOGENETIC AND THERAPEUTIC IMPLICATIONS M Mancini, C Monaldi, S De Santis, C Papayannidis, M Rondoni, ... HemaSphere 3 (S1), 662-663, 2019 | | 2019 |
| SETD2 NON-GENOMIC LOSS OF FUNCTION IN ADVANCED SYSTEMIC MASTOCYTOSIS (SM): PATHOGENETIC AND THERAPEUTIC IMPLICATIONS M Mancini, C Monaldi, S De Santis, C Papayannidis, M Rondoni, ... HAEMATOLOGICA 103, S48-S48, 2018 | | 2018 |
| RALE051: a novel established cell line of sporadic Burkitt lymphoma A L’Abbate, I Iacobucci, A Lonoce, A Turchiano, E Ficarra, G Paciello, ... Leukemia & Lymphoma 59 (5), 1252-1255, 2018 | | 2018 |
| geneEX a novel tool to assess differential expression from gene and exon sequencing data O Scicolone, G Paciello, E Ficarra BIOINFORMATICS 2018-9th International Conference on Bioinformatics Models …, 2018 | | 2018 |
| A Novel Tool to Assess Differential Expression from Gene and Exon Sequencing Data OM Scicolone, G Paciello, E Ficarra | | 2018 |
| SETD2 Non-Genomic Loss of Function and p53 Functional Inactivation in Advanced Systemic Mastocytosis (SM): Pathogenetic and Therapeutic Implications M Mancini, C Monaldi, S De Santis, C Papayannidis, M Rondoni, ... Blood 130, 2944, 2017 | | 2017 |
