| Bio-inspired cryptosystem with DNA cryptography and neural networks S Basu, M Karuppiah, M Nasipuri, AK Halder, N Radhakrishnan Journal of Systems Architecture 94, 24-31, 2019 | 43 | 2019 |
| Drug repurposing for COVID-19 using computational screening: Is Fostamatinib/R406 a potential candidate? S Saha, AK Halder, SS Bandyopadhyay, P Chatterjee, M Nasipuri, ... Methods 203, 564-574, 2022 | 31* | 2022 |
| Review of computational methods for virus–host protein interaction prediction: a case study on novel Ebola–human interactions AK Halder, P Dutta, M Kundu, S Basu, M Nasipuri Briefings in functional genomics 17 (6), 381-391, 2018 | 26 | 2018 |
| Aggregated Network Centrality Shows Non-Random Structure of Genomic and Proteomic Networks AK Halder, M Denkiewicz, K Sengupta, S Basu, D Plewczynski Methods (https://doi.org/10.1016/j.ymeth.2019.11.006), 2019 | 17 | 2019 |
| HdK-means: Hadoop based parallel K-means clustering for big data SS Bandyopadhyay, AK Halder, P Chatterjee, M Nasipuri, S Basu 2017 IEEE Calcutta Conference (CALCON), 452-456, 2017 | 12 | 2017 |
| 3gClust: Human Protein Cluster Analysis AK Halder, P Chatterjee, M Nasipuri, D Plewczynski, S Basu IEEE/ACM transactions on computational biology and bioinformatics 16 (6 …, 2018 | 9 | 2018 |
| ML-DTD: machine learning-based drug target discovery for the potential treatment of COVID-19 S Saha, P Chatterjee, AK Halder, M Nasipuri, S Basu, D Plewczynski Vaccines 10 (10), 1643, 2022 | 7* | 2022 |
| Computational modeling of human-nCoV protein-protein interaction network SB Sovan Saha, Anup Kumar Halder, Soumyendu Sekhar Bandyopadhyay, Piyali ... Methods (https://doi.org/10.1016/j.ymeth.2021.12.003), 2021 | 7* | 2021 |
| JUPPI: A multi-level feature based method for PPI prediction and a refined strategy for performance assessment AK Halder, SS Bandyopadhyay, P Chatterjee, M Nasipuri, D Plewczynski, ... IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (1 …, 2022 | 6 | 2022 |
| A survey on Ebola genome and current trends in computational research on the Ebola virus P Dutta, AK Halder, S Basu, M Kundu Briefings in Functional Genomics 17 (6), 374-380, 2018 | 6 | 2018 |
| S-palmitoylation of synaptic proteins as a novel mechanism underlying sex-dependent differences in neuronal plasticity M Zaręba-Kozioł, A Bartkowiak-Kaczmarek, M Roszkowska, K Bijata, ... International Journal of Molecular Sciences 22 (12), 6253, 2021 | 5 | 2021 |
| Assessment of GO-based protein interaction affinities in the large-scale human–coronavirus family interactome SS Bandyopadhyay, AK Halder, S Saha, P Chatterjee, M Nasipuri, S Basu Vaccines 11 (3), 549, 2023 | 4 | 2023 |
| PFP-GO: Integrating protein sequence, domain and Protein-Protein Interaction Information for Protein Function Prediction using Ranked GO terms K Sengupta, S Saha, A Kumar Halder, P Chatterjee, M Nasipuri, S Basu, ... Frontiers in Genetics, 2635, 2022 | 4 | 2022 |
| Prediction of chromatin looping using deep hybrid learning (DHL) M Chiliński, AK Halder, D Plewczynski Quantitative Biology 11 (2), 155-162, 2023 | 3 | 2023 |
| Prediction of thyroid cancer genes using an ensemble of post translational modification, semantic and structural similarity based clustering results AK Halder, P Dutta, M Kundu, M Nasipuri, S Basu International Conference on Pattern Recognition and Machine Intelligence …, 2017 | 3 | 2017 |
| Rule-Based Pruning and In Silico Identification of Essential Proteins in Yeast PPIN A Banik, S Podder, S Saha, P Chatterjee, AK Halder, M Nasipuri, S Basu, ... Cells 11 (17), 2648, 2022 | 2 | 2022 |
| RFCM-PALM: In-Silico Prediction of S-Palmitoylation Sites in the Synaptic Proteins for Male/Female Mouse Data SS Bandyopadhyay, AK Halder, M Zaręba-Kozioł, ... International Journal of Molecular Sciences 22 (18), 9901, 2021 | 2 | 2021 |
| SeqPIP-2020: Sequence based Protein Interaction Prediction Contest AK Halder, AF Mollah, P Chatterjee, DK Kole, S Basu, D Plewczyński bioRxiv, 2020.11. 12.380774, 2020 | 2 | 2020 |
| ccLoopER: Deep Prediction of CTCF and cohesin Mediated Chromatin looping Using DNA Transformer Model AK Halder, A Agarwal, S Korsak, K Jodkowska, D Plewczynski International Conference on Pattern Recognition and Machine Intelligence …, 2023 | 1 | 2023 |
| A systematic analyses of different bioinformatics pipelines for genomic data and its impact on deep learning models for chromatin loop prediction AK Halder, A Agarwal, K Jodkowska, D Plewczynski Briefings in Functional Genomics, elae009, 2024 | | 2024 |
Subhadip BasuProfessor of Computer Science & Engineering, Jadavpur UniversityVerified email at jadavpuruniversity.in
