Francesco Gatto
Francesco Gatto
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Recon3D enables a three-dimensional view of gene variation in human metabolism
E Brunk, S Sahoo, DC Zielinski, A Altunkaya, A Dräger, N Mih, F Gatto, ...
Nature biotechnology 36 (3), 272, 2018
Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma
F Gatto, I Nookaew, J Nielsen
Proceedings of the National Academy of Sciences 111 (9), E866-E875, 2014
Genome‐scale modeling of human metabolism–a systems biology approach
A Mardinoglu, F Gatto, J Nielsen
Biotechnology journal 8 (9), 985-996, 2013
Absolute quantification of protein and mRNA abundances demonstrate variability in gene-specific translation efficiency in yeast
PJ Lahtvee, BJ Sánchez, A Smialowska, S Kasvandik, IE Elsemman, ...
Cell systems 4 (5), 495-504. e5, 2017
Flux balance analysis predicts essential genes in clear cell renal cell carcinoma metabolism
F Gatto, H Miess, A Schulze, J Nielsen
Scientific reports 5, 10738, 2015
Glycosaminoglycan profiling in patients’ plasma and urine predicts the occurrence of metastatic clear cell renal cell carcinoma
F Gatto, N Volpi, H Nilsson, I Nookaew, M Maruzzo, A Roma, ...
Cell reports 15 (8), 1822-1836, 2016
Systematic analysis reveals that cancer mutations converge on deregulated metabolism of arachidonate and xenobiotics
F Gatto, A Schulze, J Nielsen
Cell reports 16 (3), 878-895, 2016
Prognostic value of plasma and urine glycosaminoglycan scores in clear cell renal cell carcinoma
F Gatto, M Maruzzo, C Magro, U Basso, J Nielsen
Frontiers in oncology 6, 253, 2016
The translational status of cancer liquid biopsies
S Bratulic, F Gatto, J Nielsen
Regenerative Engineering and Translational Medicine, 1-41, 2019
Kiwi: a tool for integration and visualization of network topology and gene-set analysis
L Väremo, F Gatto, J Nielsen
BMC bioinformatics 15 (1), 1-6, 2014
Human protein secretory pathway genes are expressed in a tissue-specific pattern to match processing demands of the secretome
A Feizi, F Gatto, M Uhlen, J Nielsen
NPJ systems biology and applications 3 (1), 1-9, 2017
Plasma glycosaminoglycans as diagnostic and prognostic biomarkers in surgically treated renal cell carcinoma
F Gatto, KA Blum, SS Hosseini, M Ghanaat, M Kashan, F Maccari, ...
European urology oncology 1 (5), 364-377, 2018
Pan-cancer analysis of the metabolic reaction network
F Gatto, R Ferreira, J Nielsen
Metabolic engineering 57, 51-62, 2020
Exploiting off‐targeting in guide‐RNA s for CRISPR systems for simultaneous editing of multiple genes
R Ferreira, F Gatto, J Nielsen
Febs Letters 591 (20), 3288-3295, 2017
Systematic analysis of overall survival and interactions between tumor mutations and drug treatment
F Gatto, J Nielsen
Journal of hematology & oncology 9 (1), 15, 2016
In search for symmetries in the metabolism of cancer
F Gatto, J Nielsen
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 8 (1), 23-35, 2016
Microbial inactivation of paprika using oregano essential oil combined with high-pressure CO2
J Casas, J Tello, F Gatto, L Calvo
The Journal of Supercritical Fluids 116, 57-61, 2016
Meta-analysis of the gut microbiota in predicting response to cancer immunotherapy in metastatic melanoma
A Limeta, B Ji, M Levin, F Gatto, J Nielsen
JCI insight 5 (23), 2020
Purine metabolism regulates DNA repair and therapy resistance in glioblastoma
W Zhou, Y Yao, AJ Scott, KW Romans, JJ Dresser, CK Werner, H Sun, ...
Nature Communications, 3811, 2020
Breast cyst fluid heparan sulphate is distinctively N‐sulphated depending on apocrine or flattened type
F Mannello, F Maccari, D Ligi, M Santi, F Gatto, RJ Linhardt, F Galeotti, ...
Cell Biochemistry and Function 33 (3), 128-133, 2015
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