Johannes Griss
Johannes Griss
PostDoc, EMBL-European Biofinformatics Institue
Verified email at ebi.ac.uk
TitleCited byYear
2016 update of the PRIDE database and its related tools
JA Vizcaíno, A Csordas, N Del-Toro, JA Dianes, J Griss, I Lavidas, ...
Nucleic acids research 44 (D1), D447-D456, 2016
25922016
2016 update of the PRIDE database and its related tools
JA Vizcaíno, A Csordas, N Del-Toro, JA Dianes, J Griss, I Lavidas, ...
Nucleic acids research 44 (D1), D447-D456, 2016
25922016
2016 update of the PRIDE database and its related tools
JA Vizcaíno, A Csordas, N Del-Toro, JA Dianes, J Griss, I Lavidas, ...
Nucleic acids research 44 (D1), D447-D456, 2016
25922016
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013
JA Vizcaíno, RG Côté, A Csordas, JA Dianes, A Fabregat, JM Foster, ...
Nucleic acids research 41 (D1), D1063-D1069, 2012
15882012
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ...
Nucleic acids research 47 (D1), D442-D450, 2019
6282019
The mzIdentML data standard for mass spectrometry-based proteomics results
AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, SJ Hubbard, ...
Molecular & Cellular Proteomics 11 (7), 2012
1782012
PRIDE Inspector: a tool to visualize and validate MS proteomics data
R Wang, A Fabregat, D Ríos, D Ovelleiro, JM Foster, RG Côté, J Griss, ...
Nature biotechnology 30 (2), 135-137, 2012
1202012
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience
J Griss, AR Jones, T Sachsenberg, M Walzer, L Gatto, J Hartler, ...
Molecular & Cellular Proteomics 13 (10), 2765-2775, 2014
922014
The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium
RG Côté, J Griss, JA Dianes, R Wang, JC Wright, HWP van den Toorn, ...
Molecular & Cellular Proteomics 11 (12), 1682-1689, 2012
912012
BioContainers: an open-source and community-driven framework for software standardization
F da Veiga Leprevost, BA Grüning, S Alves Aflitos, HL Röst, J Uszkoreit, ...
Bioinformatics 33 (16), 2580-2582, 2017
862017
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets
J Griss, Y Perez-Riverol, S Lewis, DL Tabb, JA Dianes, N Del-Toro, ...
Nature methods 13 (8), 651, 2016
832016
PRIDE inspector toolsuite: moving toward a universal visualization tool for proteomics data standard formats and quality assessment of ProteomeXchange datasets
Y Perez-Riverol, QW Xu, R Wang, J Uszkoreit, J Griss, A Sanchez, ...
Molecular & Cellular Proteomics 15 (1), 305-317, 2016
552016
Cytoplasmic proteome and secretome profiles of differently stimulated human dendritic cells
NC Gundacker, VJ Haudek, H Wimmer, A Slany, J Griss, V Bochkov, ...
Journal of proteome research 8 (6), 2799-2811, 2009
492009
PRIDE Cluster: building a consensus of proteomics data
J Griss, JM Foster, H Hermjakob, JA Vizcaíno
Nature methods 10 (2), 95, 2013
452013
Tumor-associated B-cells induce tumor heterogeneity and therapy resistance
R Somasundaram, G Zhang, M Fukunaga-Kalabis, M Perego, C Krepler, ...
Nature communications 8 (1), 1-16, 2017
442017
Tumor-associated B cells in cutaneous primary melanoma and improved clinical outcome
K Garg, M Maurer, J Griss, MC Brüggen, IH Wolf, C Wagner, N Willi, ...
Human pathology 54, 157-164, 2016
412016
Proteome signatures of inflammatory activated primary human peripheral blood mononuclear cells
VJ Haudek-Prinz, P Klepeisz, A Slany, J Griss, A Meshcheryakova, ...
Journal of proteomics 76, 150-162, 2012
402012
Spectral library searching in proteomics
J Griss
Proteomics 16 (5), 729-740, 2016
392016
Greazy: open-source software for automated phospholipid tandem mass spectrometry identification
MA Kochen, MC Chambers, JD Holman, AI Nesvizhskii, ST Weintraub, ...
Analytical chemistry 88 (11), 5733-5741, 2016
362016
Introducing a new parameter for quality control of proteome profiles: consideration of commonly expressed proteins
A Slany, VJ Haudek, NC Gundacker, J Griss, T Mohr, H Wimmer, ...
Electrophoresis 30 (8), 1306-1328, 2009
352009
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