Structure of HIV TAR in complex with a Lab-Evolved RRM provides insight into duplex RNA recognition and synthesis of a constrained peptide that impairs transcription IA Belashov, DW Crawford, CE Cavender, P Dai, PC Beardslee, ... Nucleic acids research 46 (13), 6401-6415, 2018 | 34 | 2018 |
Arginine forks are a widespread motif to recognize phosphate backbones and guanine nucleobases in the RNA major groove SS Chavali, CE Cavender, DH Mathews, JE Wedekind Journal of the American Chemical Society 142 (47), 19835-19839, 2020 | 32 | 2020 |
Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation GM Schroeder, D Dutta, CE Cavender, JL Jenkins, EM Pritchett, CD Baker, ... Nucleic acids research 48 (14), 8146-8164, 2020 | 27 | 2020 |
A small RNA that cooperatively senses two stacked metabolites in one pocket for gene control GM Schroeder, CE Cavender, ME Blau, JL Jenkins, DH Mathews, ... Nature Communications 13 (1), 199, 2022 | 21 | 2022 |
Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal E Glasser, D Maji, G Biancon, AMK Puthenpeedikakkal, CE Cavender, ... Nucleic Acids Research 50 (9), 5299-5312, 2022 | 10 | 2022 |
Structure-based experimental datasets for benchmarking of protein simulation force fields CE Cavender, DA Case, JCH Chen, LT Chong, DA Keedy, ... arXiv preprint arXiv:2303.11056, 2023 | 4 | 2023 |
Isothermal Titration Calorimetry Analysis of a Cooperative Riboswitch Using an Interdependent-Sites Binding Model CE Cavender, GM Schroeder, DH Mathews, JE Wedekind RNA Structure and Dynamics, 53-73, 2022 | 2 | 2022 |
Development and benchmarking of an open, self-consistent force field for proteins and small molecules from the open force field initiative CE Cavender, PK Behara, S Boothroyd, DL Dotson, JT Horton, JA Mitchell, ... Biophysical Journal 122 (3), 421a, 2023 | 1 | 2023 |
Trafficking of excitatory amino acid transporter 2-laden vesicles in cultured astrocytes: A comparison between approximate and exact determination of trajectory angles CE Cavender, MK Gottipati, V Parpura Amino acids 47, 357-367, 2015 | 1 | 2015 |
Method for the determination of trajectory angles of directional secretory vesicles in cultured astrocytes CE Cavender, MK Gottipati, EB Malarkey, V Parpura Inquiro 7, 48, 2013 | 1 | 2013 |
Development and benchmarking of a self-consistent force field for proteins and small molecules from open force field CE Cavender, PK Behara, DL Dotson, AJ Friedman, T Gokey, JT Horton, ... Biophysical Journal 123 (3), 421a, 2024 | | 2024 |
Discovery of a bacterial riboswitch class that binds metabolites in a stacked configuration for cooperative gene regulation J Wedekind, G Schroeder, C Cavender, M Blau, D Mathews, J Jenkins Acta Crystallographica Section A: Foundations and Advances 78, a25-a25, 2022 | | 2022 |
Building an open, self-consistent force field for biopolymers and small molecules with the open force field initiative infrastructure CE Cavender, PK Behara, S Boothroyd, DL Dotson, IJ Pulido, ... Biophysical Journal 121 (3), 272a, 2022 | | 2022 |
What the Fork? A Structural Bioinformatics Approach to Decipher Patterns in Arginine-Fork Mediated RNA Recognition SS Chavali, CE Cavender, DH Mathews, JE Wedekind Biophysical Journal 120 (3), 36a-37a, 2021 | | 2021 |
Capturing the Influence of Solvent and Local Structure in a Fixed-Charge Force Field for RNA CE Cavender University of Rochester, 2021 | | 2021 |
Capturing the Influence of Solvent and Neighboring Residues in a Fixed-Charge Force Field for RNA CE Cavender, LG Smith, A Grossfield, DH Mathews Biophysical Journal 118 (3), 68a, 2020 | | 2020 |
Exploring Hydrogen Bond Geometry in RNA with F-SAPT LG Smith, CE Cavender, A Grossfield, DH Mathews Biophysical Journal 116 (3), 143a, 2019 | | 2019 |
Developing an Accurate All-Atom Fixed-Charge Force Field for RNA with Implicitly Polarized Charges CE Cavender, LG Smith, A Grossfield, DH Mathews Biophysical Journal 116 (3), 353a, 2019 | | 2019 |
Exploring Low-Energy Pathways that Interconvert the Apo and Bound States of a Metabolite-Sensing Gene-Regulatory RNA Switch JE Wedekind, D Dutta, CE Cavender, AM DiCola, GM Schroeder, ... Acta Crystallographica Section A: Foundations and Advances 75, a18-a18, 2019 | | 2019 |
Conformational Dynamics of the HIV-1 Trans-Activation Response Element RNA Hairpin Bound to a Lab-Evolved Peptide CE Cavender, IA Belashov, JE Wedekind, DH Mathews Biophysical Journal 114 (3), 337a, 2018 | | 2018 |