Mario Stanke
Cited by
Cited by
AUGUSTUS: ab initio prediction of alternative transcripts
M Stanke, O Keller, I Gunduz, A Hayes, S Waack, B Morgenstern
Nucleic acids research 34 (suppl_2), W435-W439, 2006
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
M Stanke, M Diekhans, R Baertsch, D Haussler
Bioinformatics 24 (5), 637-644, 2008
Gene prediction with a hidden Markov model and a new intron submodel
M Stanke, S Waack
Bioinformatics-Oxford 19 (2), 215-225, 2003
The genome of the model beetle and pest Tribolium castaneum.
S Richards, RA Gibbs, GM Weinstock, SJ Brown, R Denell, RW Beeman, ...
Nature 452 (7190), 949-955, 2008
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
M Stanke, B Morgenstern
Nucleic acids research 33 (suppl_2), W465-W467, 2005
Genome Sequence of Aedes aegypti, a Major Arbovirus Vector
V Nene, JR Wortman, D Lawson, B Haas, C Kodira, Z Tu, B Loftus, Z Xi, ...
Science 316 (5832), 1718-1723, 2007
AUGUSTUS: a web server for gene finding in eukaryotes
M Stanke, R Steinkamp, S Waack, B Morgenstern
Nucleic acids research 32 (suppl_2), W309-W312, 2004
The genome of the blood fluke Schistosoma mansoni
M Berriman, BJ Haas, PT LoVerde, RA Wilson, GP Dillon, GC Cerqueira, ...
Nature 460 (7253), 352-358, 2009
The Amphimedon queenslandica genome and the evolution of animal complexity
M Srivastava, O Simakov, J Chapman, B Fahey, MEA Gauthier, T Mitros, ...
Nature 466 (7307), 720-726, 2010
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
M Stanke, O Schöffmann, B Morgenstern, S Waack
BMC bioinformatics 7, 1-11, 2006
Genome Sequence of the Pea Aphid Acyrthosiphon pisum
International Aphid Genomics Consortium
PLoS biology 8 (2), e1000313, 2010
Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species
JH Werren, S Richards, CA Desjardins, O Niehuis, J Gadau, ...
Science 327 (5963), 343-348, 2010
BRAKER1: unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS
KJ Hoff, S Lange, A Lomsadze, M Borodovsky, M Stanke
Bioinformatics 32 (5), 767-769, 2016
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database
T Brůna, KJ Hoff, A Lomsadze, M Stanke, M Borodovsky
NAR genomics and bioinformatics 3 (1), lqaa108, 2021
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ...
Nature methods 10 (12), 1177-1184, 2013
Draft genome of the filarial nematode parasite Brugia malayi
E Ghedin, S Wang, D Spiro, E Caler, Q Zhao, J Crabtree, JE Allen, ...
Science 317 (5845), 1756-1760, 2007
The UCSC genome browser database: 2008 update
D Karolchik, RM Kuhn, R Baertsch, GP Barber, H Clawson, M Diekhans, ...
Nucleic acids research 36 (suppl_1), D773-D779, 2007
Draft genome sequence of the oilseed species Ricinus communis
AP Chan, J Crabtree, Q Zhao, H Lorenzi, J Orvis, D Puiu, ...
Nature biotechnology 28 (9), 951-956, 2010
Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics
P Arensburger, K Megy, RM Waterhouse, J Abrudan, P Amedeo, B Antelo, ...
Science 330 (6000), 86-88, 2010
A novel hybrid gene prediction method employing protein multiple sequence alignments
O Keller, M Kollmar, M Stanke, S Waack
Bioinformatics 27 (6), 757-763, 2011
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