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Phil Ewels
Phil Ewels
Seqera Labs
Verified email at seqera.io - Homepage
Title
Cited by
Year
A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements
G Arnqvist, I Westerberg, J Galbraith, A Sayadi, DG Scofield, RA Olsen, ...
G3: Genes, Genomes, Genetics 14 (2), jkad266, 2024
32024
Linked-read whole-genome sequencing resolves common and private structural variants in multiple myeloma
L Peña-Pérez, N Frengen, J Hauenstein, C Gran, C Gustafsson, J Eisfeldt, ...
Blood Advances 6 (17), 5009-5023, 2022
22022
Ten simple rules for making a software tool workflow-ready
P Brack, P Crowther, S Soiland-Reyes, S Owen, D Lowe, AR Williams, ...
PLoS computational biology 18 (3), e1009823, 2022
112022
Local selection signals in the genome of blue tits emphasize regulatory and neuronal evolution
JC Mueller, E Botero‐Delgadillo, P Espíndola‐Hernández, C Gilsenan, ...
Molecular Ecology 31 (5), 1504-1514, 2022
12022
Ultralow amounts of DNA from long-term archived serum samples produce high-quality methylomes
MW Wojewodzic, M Leithaug, M Lauritzen, R Lyle, S Haglund, CJ Rubin, ...
Clinical epigenetics 13 (1), 107, 2021
12021
DIAproteomics: A multifunctional data analysis pipeline for data-independent acquisition proteomics and peptidomics
L Bichmann, S Gupta, G Rosenberger, L Kuchenbecker, T Sachsenberg, ...
Journal of proteome research 20 (7), 3758-3766, 2021
232021
A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines
Y Chen, NM Davidson, YK Wan, H Patel, F Yao, HM Low, C Hendra, ...
BioRxiv, 2021.04. 21.440736, 2021
592021
Implementing FAIR digital objects in the EOSC-Life workflow collaboratory
C Goble, S Soiland-Reyes, F Bacall, S Owen, A Williams, I Eguinoa, ...
Zenodo, 2021
522021
Sarek: A portable workflow for whole-genome sequencin g analysis of germline and somatic variants [version 1; peer
M Garcia, S Juhos, M Larsson, PI Olason, M Martin, J Eisfeldt, ...
2020
Linked‐read sequencing enables haplotype‐resolved resequencing at population scale
D Lutgen, R Ritter, RA Olsen, H Schielzeth, J Gruselius, P Ewels, ...
Molecular ecology resources 20 (5), 1311-1322, 2020
202020
Building an international consortium for tracking coronavirus health status (vol 78, pg 931, 2020)
E Segal, F Zhang, X Lin, G King, O Shalem, S Shilo, WE Allen, ...
NATURE MEDICINE 26 (8), 1309-1309, 2020
2020
Building an international consortium for tracking coronavirus health status
E Segal, F Zhang, X Lin, G King, O Shalem, S Shilo, WE Allen, ...
Nature medicine 26 (8), 1161-1165, 2020
392020
The nf-core framework for community-curated bioinformatics pipelines
PA Ewels, A Peltzer, S Fillinger, H Patel, J Alneberg, A Wilm, MU Garcia, ...
Nature biotechnology 38 (3), 276-278, 2020
10972020
Building an International Consortium for Tracking Coronavirus Health Status (preprint)
E Segal, F Zhang, X Lin, G King, O Shalem, S Shilo, WE Allen, YH Grad, ...
2020
Phased WGS by direct library preparation from 240 FACS sorted cells for comprehensive genetics in multiple myeloma
C Gran, L Pena-Perez, J Eisfeldt, C Gustafsson, JB Bruchfeld, ...
European Journal of Human Genetics 28 (SUPPL 1), 605-606, 2020
2020
Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants
M Garcia, S Juhos, M Larsson, PI Olason, M Martin, J Eisfeldt, ...
F1000Research 9, 2020
1272020
Genome-wide evidence supports mitochondrial relationships and pervasive parallel phenotypic evolution in open-habitat chats
M Schweizer, VM Warmuth, NA Kakhki, M Aliabadian, M Förschler, ...
Molecular phylogenetics and evolution 139, 106568, 2019
62019
Analysis of genome sequencing data with a minimal investment IT-infrastructure
J Alneberg, MU Garcia, A Peltzer, T Koch, M Proks, A Wilm, PA Ewels
European Journal of Human Genetics 27 (Suppl. 2), 1706, 2019
2019
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
7992018
Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women
K Engström, TK Wojdacz, F Marabita, P Ewels, M Käller, F Vezzi, ...
Archives of toxicology 91, 2067-2078, 2017
292017
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Articles 1–20