Shintaro Katayama
Shintaro Katayama
Department of Biosciences and Nutrition, Karolinska Institutet
Verified email at ki.se
TitleCited byYear
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
Science 309 (5740), 1559-1563, 2005
31772005
Antisense transcription in the mammalian transcriptome
S Katayama, Y Tomaru, T Kasukawa, K Waki, M Nakanishi, M Nakamura, ...
Science 309 (5740), 1564-1566, 2005
16742005
Genome-wide analysis of mammalian promoter architecture and evolution
P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ...
Nature genetics 38 (6), 626, 2006
12522006
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
T Shiraki, S Kondo, S Katayama, K Waki, T Kasukawa, H Kawaji, ...
Proceedings of the National Academy of Sciences 100 (26), 15776-15781, 2003
7122003
A promoter-level mammalian expression atlas
ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL De Hoon, V Haberle, ...
Nature 507 (7493), 462, 2014
7072014
An atlas of combinatorial transcriptional regulation in mouse and man
T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ...
Cell 140 (5), 744-752, 2010
6082010
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
T Ravasi, H Suzuki, KC Pang, S Katayama, M Furuno, R Okunishi, ...
Genome research 16 (1), 11-19, 2006
4982006
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ...
Nature genetics 41 (5), 553, 2009
3972009
Hidden layers of human small RNAs
H Kawaji, M Nakamura, Y Takahashi, A Sandelin, S Katayama, S Fukuda, ...
BMC genomics 9 (1), 157, 2008
2902008
Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs
N Maeda, T Kasukawa, R Oyama, J Gough, M Frith, PG Engström, ...
PLoS genetics 2 (4), e62, 2006
1892006
Androgen‐responsive long noncoding RNA CTBP1‐AS promotes prostate cancer
K Takayama, K Horie‐Inoue, S Katayama, T Suzuki, S Tsutsumi, K Ikeda, ...
The EMBO journal 32 (12), 1665-1680, 2013
1882013
Unamplified cap analysis of gene expression on a single-molecule sequencer
M Kanamori-Katayama, M Itoh, H Kawaji, T Lassmann, S Katayama, ...
Genome research 21 (7), 1150-1159, 2011
1522011
Transcriptional network dynamics in macrophage activation
R Nilsson, VB Bajic, H Suzuki, D di Bernardo, J Björkegren, S Katayama, ...
Genomics 88 (2), 133-142, 2006
1312006
miR-148a is an androgen-responsive microRNA that promotes LNCaP prostate cell growth by repressing its target CAND1 expression
T Murata, K Takayama, S Katayama, T Urano, K Horie-Inoue, K Ikeda, ...
Prostate cancer and prostatic diseases 13 (4), 356, 2010
1272010
The complexity of the mammalian transcriptome
S Gustincich, A Sandelin, C Plessy, S Katayama, R Simone, D Lazarevic, ...
The Journal of physiology 575 (2), 321-332, 2006
1252006
CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis
H Kawaji, T Kasukawa, S Fukuda, S Katayama, C Kai, J Kawai, P Carninci, ...
Nucleic acids research 34 (suppl_1), D632-D636, 2006
932006
Integration of cap analysis of gene expression and chromatin immunoprecipitation analysis on array reveals genome-wide androgen receptor signaling in prostate cancer cells
K Takayama, S Tsutsumi, S Katayama, T Okayama, K Horie-Inoue, ...
Oncogene 30 (5), 619, 2011
872011
Dynamic usage of transcription start sites within core promoters
H Kawaji, MC Frith, S Katayama, A Sandelin, C Kai, J Kawai, P Carninci, ...
Genome biology 7 (12), R118, 2006
872006
The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
H Kawaji, J Severin, M Lizio, A Waterhouse, S Katayama, KM Irvine, ...
Genome biology 10 (4), R40, 2009
812009
SAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization
S Katayama, V Töhönen, S Linnarsson, J Kere
Bioinformatics 29 (22), 2943-2945, 2013
722013
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Articles 1–20