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Burçak Otlu
Burçak Otlu
Assistant Professor at Middle East Technical University, Postdoctoral Scholar at UC San Diego
Verified email at ucsd.edu - Homepage
Title
Cited by
Cited by
Year
Characterizing mutational signatures in human cancer cell lines reveals episodic APOBEC mutagenesis
M Petljak, LB Alexandrov, JS Brammeld, S Price, DC Wedge, ...
Cell 176 (6), 1282-1294. e20, 2019
3432019
Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor
SMA Islam, M Díaz-Gay, Y Wu, M Barnes, R Vangara, EN Bergstrom, ...
Cell genomics 2 (11), 2022
1392022
Genomic and evolutionary classification of lung cancer in never smokers
T Zhang, P Joubert, N Ansari-Pour, W Zhao, PH Hoang, R Lokanga, ...
Nature genetics 53 (9), 1348-1359, 2021
942021
Integromic analysis of genetic variation and gene expression identifies networks for cardiovascular disease phenotypes
C Yao, BH Chen, R Joehanes, B Otlu, X Zhang, C Liu, T Huan, O Tastan, ...
Circulation 131 (6), 536-549, 2015
742015
The genomic and epigenomic evolutionary history of papillary renal cell carcinomas
B Zhu, ML Poeta, M Costantini, T Zhang, J Shi, S Sentinelli, W Zhao, ...
Nature communications 11 (1), 3096, 2020
212020
GLANET: genomic loci annotation and enrichment tool
B Otlu, C Firtina, S Keleş, O Tastan
Bioinformatics 33 (18), 2818-2828, 2017
172017
DNA damage and somatic mutations in mammalian cells after irradiation with a nail polish dryer
M Zhivagui, A Hoda, N Valenzuela, YY Yeh, J Dai, Y He, SP Nandi, B Otlu, ...
Nature communications 14 (1), 276, 2023
162023
Topography of mutational signatures in human cancer
B Otlu, M Díaz-Gay, I Vermes, EN Bergstrom, M Zhivagui, M Barnes, ...
Cell reports 42 (8), 2023
132023
Inexpensive and robust 3D model acquisition system for three-dimensional modeling of small artifacts
U Yılmaz, O Özün, B Otlu, A Mülayim, V Atalay
ISPRS CIPA, 2003
62003
Geographic variation of mutagenic exposures in kidney cancer genomes
S Senkin, S Moody, M Díaz-Gay, B Abedi-Ardekani, T Cattiaux, ...
medRxiv, 2023.06. 20.23291538, 2023
32023
Consistency of projective reconstructions obtained from the same image pair
B OTLU, MV ATALAY, R HASSANPOUR
Recent Trends In Multimedia Information Processing, 376-381, 2002
32002
JOA: Joint Overlap Analysis of multiple genomic interval sets
B Otlu, T Can
BMC bioinformatics 20, 1-14, 2019
22019
Relative consistency of projective reconstructions obtained from the same image pair
B Otlu, MV Atalay, R Hassanpour
International Journal of Pattern Recognition and Artificial Intelligence 20 …, 2006
12006
Evaluating topography of mutational signatures with SigProfilerTopography
B Otlu, LB Alexandrov
bioRxiv, 2024.01. 08.574683, 2024
2024
Prediction of Non-coding Driver Mutations Using Ensemble Learning
S Basharat, R Hüseynov, HH Kılınç, B Otlu
2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2023
2023
Abstract LB059: DNA damage and somatic mutations in mammalian cells after irradiation with a nail polish dryer
M Zhivagui, A Hoda, N Valenzuela, Y Yeh, J Dai, Y He, SP Nandi, B Otlu, ...
Cancer Research 83 (8_Supplement), LB059-LB059, 2023
2023
15th International Symposium on Health Informatics and Bioinformatics HIBIT’22 (20-22 October 2022)
Y Aydın Son, A Karahan, B Otlu
Orta Doğu Teknik Üniversitesi Enformatik Enstitüsü, 2022
2022
Supplementary Materials for ‘GLANET: Genomic Loci ANnotation and Enrichment Tool’
B Otlu, C Firtina, S Keles, O Tastan
Gen 10, 00, 2017
2017
Tools and techniques for assessing functional relevance of genomicloci
B Otlu
Middle East Technical University, 2017
2017
Relative consistency of projective reconstructions obtained from an image pair
B Otlu
Middle East Technical University, 2011
2011
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Articles 1–20