Thomas Ouldridge
Thomas Ouldridge
Department of Bioengineering, Imperial College London
Verifierad e-postadress på imperial.ac.uk - Startsida
Titel
Citeras av
Citeras av
År
Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model
TE Ouldridge, AA Louis, JPK Doye
The Journal of chemical physics 134 (8), 085101, 2011
3122011
On the biophysics and kinetics of toehold-mediated DNA strand displacement
N Srinivas, TE Ouldridge, P Šulc, JM Schaeffer, B Yurke, AA Louis, ...
Nucleic acids research 41 (22), 10641-10658, 2013
3112013
Sequence-dependent thermodynamics of a coarse-grained DNA model
P Šulc, F Romano, TE Ouldridge, L Rovigatti, JPK Doye, AA Louis
The Journal of chemical physics 137 (13), 135101, 2012
1952012
DNA hybridization kinetics: zippering, internal displacement and sequence dependence
TE Ouldridge, P Šulc, F Romano, JPK Doye, AA Louis
Nucleic acids research 41 (19), 8886-8895, 2013
1742013
DNA nanotweezers studied with a coarse-grained model of DNA
TE Ouldridge, AA Louis, JPK Doye
Physical review letters 104 (17), 178101, 2010
1672010
Introducing improved structural properties and salt dependence into a coarse-grained model of DNA
BEK Snodin, F Randisi, M Mosayebi, P Šulc, JS Schreck, F Romano, ...
The Journal of chemical physics 142 (23), 234901, 2015
1482015
Coarse-graining DNA for simulations of DNA nanotechnology
JPK Doye, TE Ouldridge, AA Louis, F Romano, P Šulc, C Matek, ...
Physical Chemistry Chemical Physics 15 (47), 20395-20414, 2013
1442013
Programmable energy landscapes for kinetic control of DNA strand displacement
RRF Machinek, TE Ouldridge, NEC Haley, J Bath, AJ Turberfield
Nature Communications 5, 2014
1222014
Guiding the folding pathway of DNA origami
KE Dunn, F Dannenberg, TE Ouldridge, M Kwiatkowska, AJ Turberfield, ...
Nature, 2015
1182015
Optimizing DNA Nanotechnology through Coarse-Grained Modeling: A Two-Footed DNA Walker
TE Ouldridge, RL Hoare, AA Louis, JPK Doye, J Bath, AJ Turberfield
ACS nano 7 (3), 2479-2490, 2013
872013
Thermodynamics of Computational Copying in Biochemical Systems
TE Ouldridge, CC Govern, PR ten Wolde
Physical Review X 7 (2), 021004, 2017
782017
A nucleotide-level coarse-grained model of RNA
P Šulc, F Romano, TE Ouldridge, JPK Doye, AA Louis
The Journal of chemical physics 140 (23), 235102, 2014
712014
Coarse-grained simulations of DNA overstretching
F Romano, D Chakraborty, JPK Doye, TE Ouldridge, AA Louis
The Journal of chemical physics 138 (8), 085101, 2013
662013
Fundamental Limits to Cellular Sensing
PR ten Wolde, NB Becker, TE Ouldridge, A Mugler
Journal of Statistical Physics 162 (5), 1395-1424, 2016
582016
Plectoneme tip bubbles: Coupled denaturation and writhing in supercoiled DNA
C Matek, TE Ouldridge, JPK Doye, AA Louis
Scientific reports 5, 2015
582015
Direct simulation of the self-assembly of a small DNA origami
BEK Snodin, F Romano, L Rovigatti, TE Ouldridge, AA Louis, JPK Doye
ACS nano 10 (2), 1724-1737, 2016
542016
Force-Induced Rupture of a DNA Duplex: From Fundamentals to Force Sensors
M Mosayebi, AA Louis, JPK Doye, TE Ouldridge
ACS nano, 2015
512015
Extracting bulk properties of self-assembling systems from small simulations
TE Ouldridge, AA Louis, JPK Doye
Journal of Physics: Condensed Matter 22 (10), 104102, 2010
482010
Biochemical Machines for the Interconversion of Mutual Information and Work
T McGrath, NS Jones, PR ten Wolde, TE Ouldridge
Physical Review Letters 118 (2), 028101, 2017
452017
The self-assembly of DNA Holliday junctions studied with a minimal model
TE Ouldridge, IG Johnston, AA Louis, JPK Doye
The Journal of chemical physics 130 (6), 065101, 2009
422009
Systemet kan inte utföra åtgärden just nu. Försök igen senare.
Artiklar 1–20