Changjin Hong
Changjin Hong
Nationwide Children's Hospital & Boston University
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PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples
C Hong, S Manimaran, Y Shen, JF Perez-Rogers, AL Byrd, ...
Microbiome 2 (1), 1-15, 2014
Pathoscope: species identification and strain attribution with unassembled sequencing data
OE Francis, M Bendall, S Manimaran, C Hong, NL Clement, ...
Genome research 23 (10), 1721-1729, 2013
Co-clustering phenome–genome for phenotype classification and disease gene discovery
TH Hwang, G Atluri, MQ Xie, S Dey, C Hong, V Kumar, R Kuang
Nucleic acids research 40 (19), e146-e146, 2012
Experiences in building an object-based storage system based on the OSD T-10 standard
D Du, D He, C Hong, J Jeong, V Kher, Y Kim, Y Lu, A Raghuveer, ...
Proceedings of MSST 6, 2006
Genome-wide profiling of the C. elegans dsRNAome
JM Whipple, OA Youssef, PJ Aruscavage, DA Nix, C Hong, WE Johnson, ...
Rna 21 (5), 786-800, 2015
Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum
H Cai, C Hong, J Gu, TG Lilburn, R Kuang, Y Wang
BMC Systems Biology 6 (3), 1-13, 2012
DNA methylation regulates alternative polyadenylation via CTCF and the cohesin complex
V Nanavaty, EW Abrash, C Hong, S Park, EE Fink, Z Li, TJ Sweet, ...
Molecular cell 78 (4), 752-764. e6, 2020
Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data
C Hong, NL Clement, S Clement, SS Hammoud, DT Carrell, BR Cairns, ...
BMC bioinformatics 14 (1), 1-8, 2013
PathoQC: computationally efficient read preprocessing and quality control for high-throughput sequencing data sets
C Hong, S Manimaran, WE Johnson
Cancer informatics 13, CIN. S13890, 2014
Heuristic reusable dynamic programming: Efficient updates of local sequence alignment
C Hong, AH Tewfik
IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (4), 570-582, 2009
A novel update propagation module for the data provenance problem: A contemplating vision on realizing data provenance from models to storage
AE Lawabni, C Hong, DHC Du, AH Tewfik
22nd IEEE/13th NASA Goddard Conference on Mass Storage Systems and …, 2005
Decitabine-and 5-azacytidine resistance emerges from adaptive responses of the pyrimidine metabolism network
X Gu, R Tohme, B Tomlinson, N Sakre, M Hasipek, L Durkin, C Schuerger, ...
Leukemia, 1-14, 2020
RE A Escola de Tempo Integral: desafios e possibilidades. Ensaio: aval. pol …, 2011
Hispanic/Latino patients with gastric adenocarcinoma have distinct molecular profiles including a high rate of germline CDH1 variants
SC Wang, Y Yeu, STG Hammer, S Xiao, M Zhu, C Hong, JR Clemenceau, ...
Cancer research 80 (11), 2114-2124, 2020
Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments
H Cai, TG Lilburn, C Hong, J Gu, R Kuang, Y Wang
BMC systems biology 9 (4), 1-11, 2015
Efficient updating of biological sequence analyses
C Hong, AH Tewfik
IEEE Journal of selected topics in signal Processing 2 (3), 365-377, 2008
Handling updates of a biological sequence based on Hidden Markov Models
C Hong, AH Tewfik, DHC Du
2005 13th European Signal Processing Conference, 1-4, 2005
Handling Updates of a Pairwise Sequence Alignment
C Hong, AH Tewfik
2006 IEEE International Conference on Acoustics Speech and Signal Processing …, 2006
Prediction of novel systems components in cell cycle regulation in malaria parasite by subnetwork alignments
H Cai, C Hong, J Gu, TG Lilburn, R Kuang, Y Wang
2012 IEEE International Conference on Bioinformatics and Biomedicine, 1-6, 2012
Designing a tighter searching space for pairwise global sequence alignments over multiple scoring systems
C Hong, AH Tewfik
2007 15th European Signal Processing Conference, 733-737, 2007
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Artiklar 1–20