Ali Masoudi-Nejad, Professor

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Zaynab MousavianUniversity of TehranVerified email at ut.ac.ir
Ali NajafiAssociate professor of Bioinformatics and Systems BiologyVerified email at ut.ac.ir
Ali MoeiniUniversity of TehranVerified email at ut.ac.ir
Abbas Nowzari-Daliniassociate prof., university of tehranVerified email at ut.ac.ir
Yosef Masoudi-SobhanzadehQueen's UniversityVerified email at queensu.ca
Falk SchreiberProfessor, University of Konstanz and Monash UniversityVerified email at uni-konstanz.de
Gholamreza BidkhoriResearcher at King's College LondonVerified email at kcl.ac.uk
Yazdan AsgariUniversity Paris-Saclay, UVSQ, Inserm, Gustave Roussy, CESP, Team "Exposome and Heredity", VillejuifVerified email at inserm.fr
Habib MotieGhaderIslamic Azad University Tabriz BranchVerified email at ut.ac.ir
Ehsan PournoorPhD student in Bioinformatics, LBB, Univerisity of TehranVerified email at ut.ac.ir
Saman Hosseini AshtianiPhD student, Stockholm UniversityVerified email at dbb.su.se
Zahra NarimaniAssistant Professor, Institute for advanced studies in Basic Sciences (IASBS), Zanjan, IranVerified email at iasbs.ac.ir
Nazanin HosseinkhanInstitute of Endocrinology and Metabolism, Iran University of Medical Sciences(IUMS)Verified email at ut.ac.ir
Susumu GotoDatabase Center for Life Science, Research Organization of Information and SystemsVerified email at dbcls.rois.ac.jp
Minoru KanehisaProfessor, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Massoud AmanlouProfessor of Medicinal Chemistry, Tehran University of Medical SciencesVerified email at tums.ac.ir
Shuhei NasudaLaboratory of Plant Breeding, Graduate School of Agriculture, Kyoto UniversityVerified email at kais.kyoto-u.ac.jp
Hossein LanjanianCellular and Molecular Endocrine Research Center, Research Institute for Endocrine Sciences, ShahidVerified email at ut.ac.ir
Yadollah OmidiNova Southeastern University, Full Professor at College of Pharmacy, Florida, USAVerified email at nova.edu
Saeed OmidiElectronic ArtsVerified email at epfl.ch

Ali Masoudi-Nejad, Professor

Laboratory of Systems Biology and Bioinformatics (LBB), University of Tehran

Verified email at ut.ac.ir - Homepage

Computational systems biology Cancer systems biology Network-based biomarker development Non-coding RNA analysis Network bio


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Identification of key components in colon adenocarcinoma using transcriptome to interactome multilayer framework E Pournoor, Z Mousavian, AN Dalini, A Masoudi-Nejad Scientific reports 10 (1), 1-14, 2020	612	2020
Kavosh: a new algorithm for finding network motifs ZRM Kashani, H Ahrabian, E Elahi, A Nowzari-Dalini, ES Ansari, S Asadi, ... BMC bioinformatics 10 (1), 1-12, 2009	248	2009
Predictive genomics: a cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data E Wang, N Zaman, S Mcgee, JS Milanese, A Masoudi-Nejad, ... Seminars in cancer biology 30, 4-12, 2015	211	2015
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments A Masoudi-Nejad, K Tonomura, S Kawashima, Y Moriya, M Suzuki, M Itoh, ... Nucleic acids research 34 (suppl_2), W459-W462, 2006	184	2006
Reconstruction of an integrated genome-scale co-expression network reveals key modules involved in lung adenocarcinoma G Bidkhori, Z Narimani, S Hosseini Ashtiani, A Moeini, A Nowzari-Dalini, ... PloS one 8 (7), e67552, 2013	160	2013
MODA: an efficient algorithm for network motif discovery in biological networks S Omidi, F Schreiber, A Masoudi-Nejad Genes & genetic systems 84 (5), 385-395, 2009	153	2009
Computational prediction of protein–protein interaction networks: algorithms and resources J Zahiri, J Hannon Bozorgmehr, A Masoudi-Nejad Current genomics 14 (6), 397-414, 2013	132	2013
Transfer of rye chromosome segments to wheat by a gametocidal system A Masoudi-Nejad, S Nasuda, RA McIntosh, TR Endo Chromosome Research 10 (5), 349-357, 2002	132	2002
PPIevo: Protein–protein interaction prediction from PSSM based evolutionary information J Zahiri, O Yaghoubi, M Mohammad-Noori, R Ebrahimpour, ... Genomics 102 (4), 237-242, 2013	116	2013
A hybrid gene selection algorithm for microarray cancer classification using genetic algorithm and learning automata H Motieghader, A Najafi, B Sadeghi, A Masoudi-Nejad Informatics in Medicine Unlocked 9, 246-254, 2017	92	2017
Alterations in cancer cell metabolism: the Warburg effect and metabolic adaptation Y Asgari, Z Zabihinpour, A Salehzadeh-Yazdi, F Schreiber, ... Genomics 105 (5-6), 275-281, 2015	89	2015
Building blocks of biological networks: a review on major network motif discovery algorithms A Masoudi-Nejad, F Schreiber, ZRM Kashani IET systems biology 6 (5), 164-174, 2012	83	2012
Drug–target interaction prediction via chemogenomic space: learning-based methods Z Mousavian, A Masoudi-Nejad Expert opinion on drug metabolism & toxicology 10 (9), 1273-1287, 2014	82	2014
Drug–target interaction prediction from PSSM based evolutionary information Z Mousavian, S Khakabimamaghani, K Kavousi, A Masoudi-Nejad Journal of pharmacological and toxicological methods 78, 42-51, 2016	67	2016
FeatureSelect: a software for feature selection based on machine learning approaches Y Masoudi-Sobhanzadeh, H Motieghader, A Masoudi-Nejad BMC bioinformatics 20 (1), 1-17, 2019	66	2019
Emerging roles of epigenetic mechanisms in Parkinson’s disease E Habibi, A Masoudi-Nejad, HM Abdolmaleky, SJ Haggarty Functional & integrative genomics 11 (4), 523-537, 2011	60	2011
LocFuse: human protein–protein interaction prediction via classifier fusion using protein localization information J Zahiri, M Mohammad-Noori, R Ebrahimpour, S Saadat, JH Bozorgmehr, ... Genomics 104 (6), 496-503, 2014	57	2014
Reconstruction of Arabidopsis thaliana fully integrated small RNA pathway SA Jamalkandi, A Masoudi-Nejad Functional & integrative genomics 9 (4), 419-432, 2009	57	2009
Controllability in cancer metabolic networks according to drug targets as driver nodes Y Asgari, A Salehzadeh-Yazdi, F Schreiber, A Masoudi-Nejad PloS one 8 (11), e79397, 2013	56	2013
Quatexelero: an accelerated exact network motif detection algorithm S Khakabimamaghani, I Sharafuddin, N Dichter, I Koch, A Masoudi-Nejad PloS one 8 (7), e68073, 2013	54	2013

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