Hyungwon Choi
Hyungwon Choi
Verified email at nus.edu.sg - Homepage
TitleCited byYear
The CRAPome: a contaminant repository for affinity purification–mass spectrometry data
D Mellacheruvu, Z Wright, AL Couzens, JP Lambert, NA St-Denis, T Li, ...
Nature methods 10 (8), 730, 2013
7612013
A global protein kinase and phosphatase interaction network in yeast
A Breitkreutz, H Choi, JR Sharom, L Boucher, V Neduva, B Larsen, ZY Lin, ...
Science 328 (5981), 1043-1046, 2010
6222010
SAINT: probabilistic scoring of affinity purification–mass spectrometry data
H Choi, B Larsen, ZY Lin, A Breitkreutz, D Mellacheruvu, D Fermin, ZS Qin, ...
Nature methods 8 (1), 70, 2011
4542011
Significance analysis of spectral count data in label-free shotgun proteomics
H Choi, D Fermin, AI Nesvizhskii
Molecular & cellular proteomics 7 (12), 2373-2385, 2008
3542008
DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics
CC Tsou, D Avtonomov, B Larsen, M Tucholska, H Choi, AC Gingras, ...
Nature methods 12 (3), 258, 2015
2802015
Protein interaction network of the mammalian Hippo pathway reveals mechanisms of kinase-phosphatase interactions
AL Couzens, JDR Knight, MJ Kean, G Teo, A Weiss, WH Dunham, ZY Lin, ...
Sci. Signal. 6 (302), rs15-rs15, 2013
2502013
A quantitative chaperone interaction network reveals the architecture of cellular protein homeostasis pathways
M Taipale, G Tucker, J Peng, I Krykbaeva, ZY Lin, B Larsen, H Choi, ...
Cell 158 (2), 434-448, 2014
2302014
False discovery rates and related statistical concepts in mass spectrometry-based proteomics
H Choi, AI Nesvizhskii
Journal of proteome research 7 (01), 47-50, 2008
2142008
SAINTexpress: improvements and additional features in Significance Analysis of INTeractome software
G Teo, G Liu, J Zhang, AI Nesvizhskii, AC Gingras, H Choi
Journal of proteomics 100, 37-43, 2014
1972014
Proteomic Analysis of Trypanosoma cruzi Secretome: Characterization of Two Populations of Extracellular Vesicles and Soluble Proteins
E Bayer-Santos, C Aguilar-Bonavides, SP Rodrigues, EM Cordero, ...
Journal of proteome research 12 (2), 883-897, 2013
1592013
Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics
H Choi, AI Nesvizhskii
Journal of proteome research 7 (01), 254-265, 2008
1362008
Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modeling
H Choi, D Ghosh, AI Nesvizhskii
Journal of proteome research 7 (01), 286-292, 2008
1122008
Differential dynamics of the mammalian mRNA and protein expression response to misfolding stress
Z Cheng, G Teo, S Krueger, TM Rock, HWL Koh, H Choi, C Vogel
Molecular systems biology 12 (1), 2016
842016
Analyzing protein‐protein interactions from affinity purification‐mass spectrometry data with SAINT
H Choi, G Liu, D Mellacheruvu, M Tyers, AC Gingras, AI Nesvizhskii
Current protocols in bioinformatics 39 (1), 8.15. 1-8.15. 23, 2012
832012
Moving beyond P values: data analysis with estimation graphics
J Ho, T Tumkaya, S Aryal, H Choi, A Claridge-Chang
Nature Methods 16 (7), 565-566, 2019
802019
MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines
T Kwon, H Choi, C Vogel, AI Nesvizhskii, EM Marcotte
Journal of proteome research 10 (7), 2949-2958, 2011
772011
Label‐free quantitative proteomics and SAINT analysis enable interactome mapping for the human Ser/Thr protein phosphatase 5
DV Skarra, M Goudreault, H Choi, M Mullin, AI Nesvizhskii, AC Gingras, ...
Proteomics 11 (8), 1508-1516, 2011
762011
Gene essentiality is a quantitative property linked to cellular evolvability
G Liu, MYJ Yong, M Yurieva, KG Srinivasan, J Liu, JSY Lim, M Poidinger, ...
Cell 163 (6), 1388-1399, 2015
752015
A latent variable approach for meta-analysis of gene expression data from multiple microarray experiments
H Choi, R Shen, AM Chinnaiyan, D Ghosh
BMC bioinformatics 8 (1), 364, 2007
652007
mapDIA: Preprocessing and statistical analysis of quantitative proteomics data from data independent acquisition mass spectrometry
G Teo, S Kim, CC Tsou, B Collins, AC Gingras, AI Nesvizhskii, H Choi
Journal of proteomics 129, 108-120, 2015
642015
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Articles 1–20