| Robust enzyme design: Bioinformatic tools for improved protein stability D Suplatov, V Voevodin, V Švedas Biotechnology journal 10 (3), 344-355, 2015 | 93 | 2015 |
| Computational design of a pH stable enzyme: understanding molecular mechanism of penicillin acylase's adaptation to alkaline conditions D Suplatov, N Panin, E Kirilin, T Shcherbakova, P Kudryavtsev, V Švedas PloS one 9 (6), e100643, 2014 | 79 | 2014 |
| Bioinformatic analysis of alpha/beta-hydrolase fold enzymes reveals subfamily-specific positions responsible for discrimination of amidase and lipase activities DA Suplatov, W Besenmatter, VK Švedas, A Svendsen Protein Engineering, Design & Selection 25 (11), 689-697, 2012 | 64 | 2012 |
| Zebra: a web server for bioinformatic analysis of diverse protein families D Suplatov, E Kirilin, V Takhaveev, V Švedas Journal of Biomolecular Structure and Dynamics 32 (11), 1752-1758, 2014 | 58 | 2014 |
| Bioinformatic analysis of the fold type I PLP‐dependent enzymes reveals determinants of reaction specificity in l‐threonine aldolase from Aeromonas jandaei K Fesko, D Suplatov, V Švedas FEBS Open Bio 8 (6), 1013-1028, 2018 | 43 | 2018 |
| pocketZebra: a web-server for automated selection and classification of subfamily-specific binding sites by bioinformatic analysis of diverse protein families D Suplatov, E Kirilin, M Arbatsky, V Takhaveev, V Švedas Nucleic acids research 42 (W1), W344-W349, 2014 | 41 | 2014 |
| Mustguseal: a server for multiple structure-guided sequence alignment of protein families DA Suplatov, KE Kopylov, NN Popova, VV Voevodin, VK Švedas Bioinformatics 34 (9), 1583-1585, 2018 | 39 | 2018 |
| Bioinformatic analysis of protein families for identification of variable amino acid residues responsible for functional diversity D Suplatov, D Shalaeva, E Kirilin, V Arzhanik, V Švedas Journal of Biomolecular Structure and Dynamics 32 (1), 75-87, 2014 | 34 | 2014 |
| Study of functional and allosteric sites in protein superfamilies D Suplatov, V Švedas Acta Naturae (англоязычная версия) 7 (4 (27)), 34-45, 2015 | 29 | 2015 |
| Neuraminidase A from Streptococcus pneumoniae has a modular organization of catalytic and lectin domains separated by a flexible linker Y Sharapova, D Suplatov, V Švedas The FEBS journal 285 (13), 2428-2445, 2018 | 26 | 2018 |
| The visualCMAT: A web-server to select and interpret correlated mutations/co-evolving residues in protein families D Suplatov, Y Sharapova, D Timonina, K Kopylov, V Švedas Journal of Bioinformatics and Computational Biology 16 (02), 1840005, 2018 | 26 | 2018 |
| Yosshi: a web-server for disulfide engineering by bioinformatic analysis of diverse protein families D Suplatov, D Timonina, Y Sharapova, V Švedas Nucleic acids research 47 (W1), W308-W314, 2019 | 25 | 2019 |
| Zebra2: advanced and easy-to-use web-server for bioinformatic analysis of subfamily-specific and conserved positions in diverse protein superfamilies D Suplatov, Y Sharapova, E Geraseva, V Švedas Nucleic acids research 48 (W1), W65-W71, 2020 | 24 | 2020 |
| parMATT: parallel multiple alignment of protein 3D-structures with translations and twists for distributed-memory systems MV Shegay, DA Suplatov, NN Popova, VK Švedas, VV Voevodin Bioinformatics 35 (21), 4456-4458, 2019 | 24 | 2019 |
| Biochemical and structural insights into PLP fold type IV transaminase from Thermobaculum terrenum EY Bezsudnova, KM Boyko, AY Nikolaeva, YS Zeifman, TV Rakitina, ... Biochimie 158, 130-138, 2019 | 22 | 2019 |
| Experimental and computational studies on the unusual substrate specificity of branched-chain amino acid aminotransferase from Thermoproteus uzoniensis EY Bezsudnova, TN Stekhanova, DA Suplatov, AV Mardanov, NV Ravin, ... Archives of biochemistry and biophysics 607, 27-36, 2016 | 22 | 2016 |
| Parallel workflow manager for non-parallel bioinformatic applications to solve large-scale biological problems on a supercomputer D Suplatov, N Popova, S Zhumatiy, V Voevodin, V Švedas Journal of bioinformatics and computational biology 14 (02), 1641008, 2016 | 19 | 2016 |
| Human p38α mitogen-activated protein kinase in the Asp168-Phe169-Gly170-in (DFG-in) state can bind allosteric inhibitor Doramapimod D Suplatov, K Kopylov, Y Sharapova, V Švedas Journal of Biomolecular Structure and Dynamics 37 (8), 2049-2060, 2019 | 18 | 2019 |
| Bioinformatic analysis of subfamily-specific regions in 3D-structures of homologs to study functional diversity and conformational plasticity in protein superfamilies D Timonina, Y Sharapova, V Švedas, D Suplatov Computational and Structural Biotechnology Journal 19, 1302-1311, 2021 | 14 | 2021 |
| Bioinformatic analysis of the nicotinamide binding site in poly (ADP-ribose) polymerase family proteins G Manasaryan, D Suplatov, S Pushkarev, V Drobot, A Kuimov, V Švedas, ... Cancers 13 (6), 1201, 2021 | 13 | 2021 |
