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James Osborne
James Osborne
Verifierad e-postadress på unimelb.edu.au - Startsida
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Chaste: an open source C++ library for computational physiology and biology
GR Mirams, CJ Arthurs, MO Bernabeu, R Bordas, J Cooper, A Corrias, ...
PLoS computational biology 9 (3), e1002970, 2013
4952013
Chaste: a test-driven approach to software development for biological modelling
J Pitt-Francis, P Pathmanathan, MO Bernabeu, R Bordas, J Cooper, ...
Computer Physics Communications 180 (12), 2452-2471, 2009
2972009
Comparing individual-based approaches to modelling the self-organization of multicellular tissues
JM Osborne, AG Fletcher, JM Pitt-Francis, PK Maini, DJ Gavaghan
PLoS computational biology 13 (2), e1005387, 2017
2162017
An integrative computational model for intestinal tissue renewal
IMM Van Leeuwen, GR Mirams, A Walter, A Fletcher, P Murray, J Osborne, ...
Cell proliferation 42 (5), 617-636, 2009
1792009
Implementing vertex dynamics models of cell populations in biology within a consistent computational framework
AG Fletcher, JM Osborne, PK Maini, DJ Gavaghan
Progress in biophysics and molecular biology 113 (2), 299-326, 2013
1722013
Cooperation, competition and antibiotic resistance in bacterial colonies
I Frost, WPJ Smith, S Mitri, AS Millan, Y Davit, JM Osborne, JM Pitt-Francis, ...
The ISME journal 12 (6), 1582-1593, 2018
1602018
Cell morphology drives spatial patterning in microbial communities
WPJ Smith, Y Davit, JM Osborne, W Kim, KR Foster, JM Pitt-Francis
Proceedings of the National Academy of Sciences 114 (3), E280-E286, 2017
1512017
A hybrid approach to multi-scale modelling of cancer
JM Osborne, A Walter, SK Kershaw, GR Mirams, AG Fletcher, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2010
1512010
A computational study of discrete mechanical tissue models
P Pathmanathan, J Cooper, A Fletcher, G Mirams, P Murray, J Osborne, ...
Physical biology 6 (3), 036001, 2009
1442009
Chaste: using agile programming techniques to develop computational biology software
J Pitt-Francis, MO Bernabeu, J Cooper, A Garny, L Momtahan, J Osborne, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2008
1052008
Paneth cell-rich regions separated by a cluster of Lgr5+ cells initiate crypt fission in the intestinal stem cell niche
AJ Langlands, AA Almet, PL Appleton, IP Newton, JM Osborne, IS Näthke
PLoS biology 14 (6), e1002491, 2016
1012016
Reversible host cell remodeling underpins deformability changes in malaria parasite sexual blood stages
M Dearnley, T Chu, Y Zhang, O Looker, C Huang, N Klonis, J Yeoman, ...
Proceedings of the National Academy of Sciences 113 (17), 4800-4805, 2016
762016
Ten simple rules for a successful cross-disciplinary collaboration
B Knapp, R Bardenet, MO Bernabeu, R Bordas, M Bruna, B Calderhead, ...
PLoS Computational Biology 11 (4), e1004214, 2015
672015
Computational models reveal a passive mechanism for cell migration in the crypt
SJ Dunn, IS Näthke, JM Osborne
PloS one 8 (11), e80516, 2013
622013
Chaste: cancer, heart and soft tissue environment
FR Cooper, RE Baker, MO Bernabeu, R Bordas, L Bowler, ...
Journal of Open Source Software 5 (47), 2020
582020
The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt
SK Kay, HA Harrington, S Shepherd, K Brennan, T Dale, JM Osborne, ...
PLoS computational biology 13 (2), e1005400, 2017
572017
Ten simple rules for effective computational research
JM Osborne, MO Bernabeu, M Bruna, B Calderhead, J Cooper, ...
PLoS Computational Biology 10 (3), e1003506, 2014
562014
A two-dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath
SJ Dunn, PL Appleton, SA Nelson, IS Näthke, DJ Gavaghan, JM Osborne
PLoS computational biology 8 (5), e1002515, 2012
532012
A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to …
TJ Sego, JO Aponte-Serrano, J Ferrari Gianlupi, SR Heaps, K Breithaupt, ...
PLoS computational biology 16 (12), e1008451, 2020
512020
Hydrodynamic dispersion within porous biofilms
Y Davit, H Byrne, J Osborne, J Pitt-Francis, D Gavaghan, M Quintard
Physical Review E 87 (1), 012718, 2013
502013
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Artiklar 1–20