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Jaak Simm
Jaak Simm
Postdoctoral researcher, University of Leuven
Verifierad e-postadress på esat.kuleuven.be
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GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks
T Moerman, S Aibar Santos, C Bravo González-Blas, J Simm, Y Moreau, ...
Bioinformatics 35 (12), 2159-2161, 2019
3312019
GRU-ODE-Bayes: Continuous modeling of sporadically-observed time series
E De Brouwer, J Simm, A Arany, Y Moreau
Advances in neural information processing systems 32, 2019
2982019
Characterization of the vaginal micro-and mycobiome in asymptomatic reproductive-age Estonian women
T Drell, T Lillsaar, L Tummeleht, J Simm, A Aaspõllu, E Väin, I Saarma, ...
PloS one 8 (1), e54379, 2013
2932013
Repurposing high-throughput image assays enables biological activity prediction for drug discovery
J Simm, G Klambauer, A Arany, M Steijaert, JK Wegner, E Gustin, ...
Cell chemical biology 25 (5), 611-618. e3, 2018
2092018
Easy hyperparameter search using optunity
M Claesen, J Simm, D Popovic, Y Moreau, B De Moor
arXiv preprint arXiv:1412.1114, 2014
1022014
The influence of different maternal microbial communities on the development of infant gut and oral microbiota
T Drell, J Štšepetova, J Simm, K Rull, A Aleksejeva, A Antson, V Tillmann, ...
Scientific reports 7 (1), 9940, 2017
892017
Evolution of bacterial consortia in spontaneously started rye sourdoughs during two months of daily propagation
M Bessmeltseva, E Viiard, J Simm, T Paalme, I Sarand
PLoS One 9 (4), e95449, 2014
892014
Tree-based ensemble multi-task learning method for classification and regression
J Simm, IM De Abril, M Sugiyama
IEICE TRANSACTIONS on Information and Systems 97 (6), 1677-1681, 2014
802014
Changes in the transcriptome of the human endometrial Ishikawa cancer cell line induced by estrogen, progesterone, tamoxifen, and mifepristone (RU486) as detected by RNA-sequencing
K Tamm-Rosenstein, J Simm, M Suhorutshenko, A Salumets, M Metsis
PloS one 8 (7), e68907, 2013
762013
The development of gut microbiota in critically ill extremely low birth weight infants assessed with 16S rRNA gene based sequencing
T Drell, I Lutsar, J Štšepetova, Ü Parm, T Metsvaht, ML Ilmoja, J Simm, ...
Gut microbes 5 (3), 304-503, 2014
682014
High-throughput sequencing approach uncovers the miRNome of peritoneal endometriotic lesions and adjacent healthy tissues
M Saare, K Rekker, T Laisk-Podar, D Soritsa, AM Roost, J Simm, ...
PLoS One 9 (11), e112630, 2014
652014
Research resource: small RNA-seq of human granulosa cells reveals miRNAs in FSHR and aromatase genes
A Velthut-Meikas, J Simm, T Tuuri, JS Tapanainen, M Metsis, A Salumets
Molecular endocrinology 27 (7), 1128-1141, 2013
632013
Linking drug target and pathway activation for effective therapy using multi-task learning
M Yang, J Simm, CC Lam, P Zakeri, GJP van Westen, Y Moreau, ...
Scientific reports 8 (1), 8322, 2018
592018
The complex microbiome from native semen to embryo culture environment in human in vitro fertilization procedure
J Štšepetova, J Baranova, J Simm, Ü Parm, T Rööp, S Sokmann, ...
Reproductive Biology and Endocrinology 18, 1-13, 2020
552020
ChemGrapher: optical graph recognition of chemical compounds by deep learning
M Oldenhof, A Arany, Y Moreau, J Simm
Journal of chemical information and modeling 60 (10), 4506-4517, 2020
542020
Hyperparameter tuning in python using optunity
M Claesen, J Simm, D Popovic, B Moor
Proceedings of the international workshop on technical computing for machine …, 2014
512014
Towards practical privacy-preserving genome-wide association study
C Bonte, E Makri, A Ardeshirdavani, J Simm, Y Moreau, F Vercauteren
BMC bioinformatics 19, 1-12, 2018
482018
Endometrial transcriptome analysis indicates superiority of natural over artificial cycles in recurrent implantation failure patients undergoing frozen embryo transfer
S Altmäe, K Tamm-Rosenstein, FJ Esteban, J Simm, L Kolberg, ...
Reproductive biomedicine online 32 (6), 597-613, 2016
472016
Diversity and stability of lactic acid bacteria in rye sourdoughs of four bakeries with different propagation parameters
E Viiard, M Bessmeltseva, J Simm, T Talve, A Aaspõllu, T Paalme, ...
PloS one 11 (2), e0148325, 2016
452016
Macau: Scalable Bayesian factorization with high-dimensional side information using MCMC
J Simm, A Arany, P Zakeri, T Haber, JK Wegner, V Chupakhin, ...
2017 IEEE 27th International Workshop on Machine Learning for Signal …, 2017
422017
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Artiklar 1–20