| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ... Nucleic acids research 46 (W1), W537-W544, 2018 | 6233 | 2018 |
| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1019 | 2018 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ... Nucleic acids research 48 (W1), W395-W402, 2020 | 462 | 2020 |
| Practical computational reproducibility in the life sciences B Grüning, J Chilton, J Köster, R Dale, N Soranzo, M van den Beek, ... Cell systems 6 (6), 631-635, 2018 | 147 | 2018 |
| C ech M E Afgan, D Baker, M Van Den Beek, D Blankenberg, D Bouvier Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman …, 2016 | 56 | 2016 |
| Paramutation in Drosophila Requires Both Nuclear and Cytoplasmic Actors of the piRNA Pathway and Induces Cis-spreading of piRNA Production C Hermant, A Boivin, L Teysset, V Delmarre, A Asif-Laidin, ... Genetics 201 (4), 1381-1396, 2015 | 46 | 2015 |
| RNA-seq data analysis in galaxy B Batut, M van den Beek, MA Doyle, N Soranzo RNA Bioinformatics, 367-392, 2021 | 42 | 2021 |
| NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy W de Koning, M Miladi, S Hiltemann, A Heikema, JP Hays, S Flemming, ... GigaScience 9 (10), giaa105, 2020 | 41 | 2020 |
| Unraveling the features of somatic transposition in the Drosophila intestine K Siudeja, M van Den Beek, N Riddiford, B Boumard, A Wurmser, ... The EMBO Journal 40 (9), e106388, 2021 | 35 | 2021 |
| Stem cell proliferation is kept in check by the chromatin regulators Kismet/CHD7/CHD8 and Trr/MLL3/4 L Gervais, M van den Beek, M Josserand, J Sallé, M Stefanutti, ... Developmental cell 49 (4), 556-573. e6, 2019 | 34 | 2019 |
| Grü ning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. 2016 E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Cˇech, ... The Galaxy platform for accessible, reproducible and collaborative …, 2016 | 33 | 2016 |
| Identification of Viral Suppressors of RNAi by a Reporter Assay in Drosophila S2 Cell Culture KWR van Cleef, JT van Mierlo, M van den Beek, RP van Rij Antiviral RNAi: Concepts, Methods, and Applications, 201-213, 2011 | 31 | 2011 |
| No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics D Baker, M Van Den Beek, D Blankenberg, D Bouvier, J Chilton, N Coraor, ... PLoS pathogens 16 (8), e1008643, 2020 | 29 | 2020 |
| Ready-to-use public infrastructure for global SARS-CoV-2 monitoring W Maier, S Bray, M van den Beek, D Bouvier, N Coraor, M Miladi, B Singh, ... Nature biotechnology 39 (10), 1178-1179, 2021 | 23 | 2021 |
| Galaxy-Kubernetes integration: scaling bioinformatics workflows in the cloud P Moreno, L Pireddu, P Roger, N Goonasekera, E Afgan, ... BioRxiv, 488643, 2018 | 19 | 2018 |
| Dual-layer transposon repression in heads of Drosophila melanogaster M Van Den Beek, B Da Silva, J Pouch, C Carré, C Antoniewski RNA 24 (12), 1749-1760, 2018 | 16 | 2018 |
| Evolution and genomic signatures of spontaneous somatic mutation in Drosophila intestinal stem cells N Riddiford, K Siudeja, M van den Beek, B Boumard, AJ Bardin Genome Research 31 (8), 1419-1432, 2021 | 13 | 2021 |
| Metavisitor, a suite of galaxy tools for simple and rapid detection and discovery of viruses in deep sequence data G Carissimo, M van den Beek, KD Vernick, C Antoniewski PLoS One 12 (1), e0168397, 2017 | 13 | 2017 |
| Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy D Larivičre, L Abueg, N Brajuka, C Gallardo-Alba, B Grüning, BJ Ko, ... Nature biotechnology 42 (3), 367-370, 2024 | 12 | 2024 |
| Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring W Maier, S Bray, M van den Beek, D Bouvier, N Coraor, M Miladi, B Singh, ... BioRxiv, 2021 | 11 | 2021 |
