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Marius van den Beek
Marius van den Beek
Sci-Scale
Verified email at sci-scale.net - Homepage
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Cited by
Cited by
Year
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
53262018
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Nucleic Acids Research 50 (W1), W345-W351, 2022
2412022
Practical computational reproducibility in the life sciences
B Grüning, J Chilton, J Köster, R Dale, N Soranzo, M van den Beek, ...
Cell systems 6 (6), 631-635, 2018
1312018
C ech M
E Afgan, D Baker, M Van Den Beek, D Blankenberg, D Bouvier
Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman …, 2016
512016
Bioconda: Sustainable and comprehensive software distribution for the life sciences
R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ...
Nature Methods 15 (7), 475-476, 2018
442018
Paramutation in Drosophila Requires Both Nuclear and Cytoplasmic Actors of the piRNA Pathway and Induces Cis-spreading of piRNA Production
C Hermant, A Boivin, L Teysset, V Delmarre, A Asif-Laidin, ...
Genetics 201 (4), 1381-1396, 2015
412015
Grü ning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. 2016
E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Cˇech, ...
The Galaxy platform for accessible, reproducible and collaborative …, 2016
342016
Identification of Viral Suppressors of RNAi by a Reporter Assay in Drosophila S2 Cell Culture
KWR van Cleef, JT van Mierlo, M van den Beek, RP van Rij
Antiviral RNAi: Concepts, Methods, and Applications, 201-213, 2011
322011
Unraveling the features of somatic transposition in the Drosophila intestine
K Siudeja, M van Den Beek, N Riddiford, B Boumard, A Wurmser, ...
The EMBO Journal 40 (9), e106388, 2021
312021
Stem cell proliferation is kept in check by the chromatin regulators Kismet/CHD7/CHD8 and Trr/MLL3/4
L Gervais, M van den Beek, M Josserand, J Sallé, M Stefanutti, ...
Developmental cell 49 (4), 556-573. e6, 2019
302019
NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy
W de Koning, M Miladi, S Hiltemann, A Heikema, JP Hays, S Flemming, ...
GigaScience 9 (10), giaa105, 2020
292020
RNA-Seq data analysis in galaxy
B Batut, M van den Beek, MA Doyle, N Soranzo
RNA Bioinformatics, 367-392, 2021
252021
No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics
D Baker, M Van Den Beek, D Blankenberg, D Bouvier, J Chilton, N Coraor, ...
PLoS pathogens 16 (8), e1008643, 2020
242020
Ready-to-use public infrastructure for global SARS-CoV-2 monitoring
W Maier, S Bray, M van den Beek, D Bouvier, N Coraor, M Miladi, B Singh, ...
Nature biotechnology 39 (10), 1178-1179, 2021
202021
Galaxy-Kubernetes integration: scaling bioinformatics workflows in the cloud
P Moreno, L Pireddu, P Roger, N Goonasekera, E Afgan, ...
BioRxiv, 488643, 2018
182018
Dual-layer transposon repression in heads of Drosophila melanogaster
M Van Den Beek, B Da Silva, J Pouch, C Carré, C Antoniewski
RNA 24 (12), 1749-1760, 2018
162018
Evolution and genomic signatures of spontaneous somatic mutation in Drosophila intestinal stem cells
N Riddiford, K Siudeja, M van den Beek, B Boumard, AJ Bardin
Genome Research 31 (8), 1419-1432, 2021
142021
Metavisitor, a suite of galaxy tools for simple and rapid detection and discovery of viruses in deep sequence data
G Carissimo, M van den Beek, KD Vernick, C Antoniewski
PLoS One 12 (1), e0168397, 2017
122017
ReGaTE: registration of galaxy tools in elixir
O Doppelt-Azeroual, F Mareuil, E Deveaud, M Kalaš, N Soranzo, ...
GigaScience 6 (6), gix022, 2017
92017
Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring
W Maier, S Bray, M van den Beek, D Bouvier, N Coraor, M Miladi, B Singh, ...
BioRxiv, 2021
82021
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