Nicholas Paul Gauthier

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Chris SanderHarvard Medical School, Broad Institute, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Martin L MillerSenior Director, AstraZenecaVerified email at astrazeneca.com
Anil KorkutMD Anderson Cancer CenterVerified email at mdanderson.org
Ed ReznikMemorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Charles M. PerouUniversity of North Carolina at Chapel HillVerified email at med.unc.edu
Joel ParkerUniversity of North Carolina at Chapel HillVerified email at email.unc.edu
JianJiong GaoCaris Life SciencesVerified email at carisls.com
Lars Juhl JensenUniversity of CopenhagenVerified email at cpr.ku.dk
Søren BrunakProfessor of Disease Systems Biology, University of CopenhagenVerified email at cpr.ku.dk
Nikolaus SchultzCenter for Molecular Oncology, Memorial Sloan Kettering Cancer CenterVerified email at cbio.mskcc.org
Giovanni CirielloDepartment of Computational Biology, University of Lausanne (UNIL)Verified email at unil.ch
Riccardo Zecchinaprofessor, theoretical physics, Bocconi UniversityVerified email at unibocconi.it
Andrea PagnaniProfessor at DISAT - Politecnico di Torino, and PI at the IIGMVerified email at polito.it
Alfredo BraunsteinDISAT, Politecnico di TorinoVerified email at polito.it
Martin WeigtSorbonne Université Paris (former Université Pierre & Marie Curie)Verified email at upmc.fr
Bulent Arman AksoyObsidian TherapeuticsVerified email at aksoy.org
Cameron BrennanAttending Neurosurgeon, Memorial Sloan-Kettering Cancer CenterVerified email at mskcc.org
Hediye Erdjument-BromageProteomics Core Manager, Memorial Sloan-Kettering Cancer Center, New York, NY, USAVerified email at ski.mskcc.org
Boris MacekUniversity of TuebingenVerified email at uni-tuebingen.de
Boumediene SoufiSandoz-Novartis divisionVerified email at sandoz.com

Nicholas Paul Gauthier

Dana Farber Cancer Institute

Verified email at jimmy.harvard.edu


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Classification and risk stratification of invasive breast carcinomas using a real-time quantitative RT-PCR assay L Perreard, C Fan, JF Quackenbush, M Mullins, NP Gauthier, E Nelson, ... Breast Cancer Research 8, 1-11, 2006	249	2006
Perturbation biology: inferring signaling networks in cellular systems EJ Molinelli, A Korkut, W Wang, ML Miller, NP Gauthier, X Jing, P Kaushik, ... PLoS computational biology 9 (12), e1003290, 2013	163	2013
Inferring protein 3D structure from deep mutation scans NJ Rollins, KP Brock, FJ Poelwijk, MA Stiffler, NP Gauthier, C Sander, ... Nature genetics 51 (7), 1170-1176, 2019	144	2019
Pan-cancer analysis of mutation hotspots in protein domains ML Miller, E Reznik, NP Gauthier, BA Aksoy, A Korkut, J Gao, G Ciriello, ... Cell systems 1 (3), 197-209, 2015	114	2015
Cyclebase. org—a comprehensive multi-organism online database of cell-cycle experiments NP Gauthier, ME Larsen, R Wernersson, U De Lichtenberg, LJ Jensen, ... Nucleic acids research 36 (suppl_1), D854-D859, 2007	88	2007
Agreement in breast cancer classification between microarray and quantitative reverse transcription PCR from fresh-frozen and formalin-fixed, paraffin-embedded tissues M Mullins, L Perreard, JF Quackenbush, N Gauthier, S Bayer, M Ellis, ... Clinical chemistry 53 (7), 1273-1279, 2007	86	2007
Cyclebase. org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results NP Gauthier, LJ Jensen, R Wernersson, S Brunak, TS Jensen Nucleic acids research 38 (suppl_1), D699-D702, 2010	69	2010
TRIM3, a tumor suppressor linked to regulation of p21Waf1/Cip1 Y Liu, R Raheja, N Yeh, D Ciznadija, AM Pedraza, T Ozawa, ... Oncogene 33 (3), 308-315, 2014	61	2014
Cell-selective labeling using amino acid precursors for proteomic studies of multicellular environments NP Gauthier, B Soufi, WE Walkowicz, VA Pedicord, KJ Mavrakis, B Macek, ... nAture methods 10 (8), 768-773, 2013	59	2013
Protein structure from experimental evolution MA Stiffler, FJ Poelwijk, KP Brock, RR Stein, A Riesselman, J Teyra, ... Cell Systems 10 (1), 15-24. e5, 2020	38	2020
MutationAligner: a resource of recurrent mutation hotspots in protein domains in cancer NP Gauthier, E Reznik, J Gao, SO Sumer, N Schultz, C Sander, ML Miller Nucleic acids research 44 (D1), D986-D991, 2016	32	2016
Perturbation biology links temporal protein changes to drug responses in a melanoma cell line E Nyman, RR Stein, X Jing, W Wang, B Marks, IK Zervantonakis, A Korkut, ... PLOS Computational Biology 16 (7), e1007909, 2020	19	2020
Systems pharmacology using mass spectrometry identifies critical response nodes in prostate cancer HA Ebhardt, A Root, Y Liu, NP Gauthier, C Sander, R Aebersold NPJ systems biology and applications 4 (1), 26, 2018	14	2018
AlignmentViewer: sequence analysis of large protein families R Reguant, Y Antipin, R Sheridan, C Dallago, D Diamantoukos, A Luna, ... F1000Research 9, 2020	10	2020
3D protein structure from genetic epistasis experiments NJ Rollins, KP Brock, FJ Poelwijk, MA Stiffler, NP Gauthier, C Sander, ... bioRxiv, 320721, 2018	8	2018
Simultaneous enhancement of multiple functional properties using evolution-informed protein design B Fram, I Truebridge, Y Su, AJ Riesselman, JB Ingraham, A Passera, ... bioRxiv, 2023	6	2023
Deep learning prediction of enzyme optimum pH JE Gado, M Knotts, AY Shaw, D Marks, NP Gauthier, C Sander, ... bioRxiv, 2023.06. 22.544776, 2023	2	2023
Protein profiling in cancer cell lines and tumor tissue using reverse phase protein arrays X Jing, W Wang, NP Gauthier, P Kaushik, A Root, RR Stein, A Korkut, ... bioRxiv, 144535, 2017	1	2017
Protein Domain Hotspots Reveal Functional Mutations across Genes in Cancer ML Miller, E Reznik, NP Gauthier, BA Aksoy, A Korkut, J Gao, G Ciriello, ... bioRxiv, 015719, 2015	1	2015
Abstract 1066 Enzymes for plastics deconstruction G Beckham, E Bell, J DesVeaux, J Gado, N Gauthier, N Murphy, ... Journal of Biological Chemistry 300 (3), 2024		2024

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