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Dannon Baker
Dannon Baker
Verified email at jhu.edu
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
33252018
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Čech, ...
Nucleic acids research 44 (W1), W3-W10, 2016
20362016
Dissemination of scientific software with Galaxy ToolShed
D Blankenberg, G Von Kuster, E Bouvier, D Baker, E Afgan, N Stoler, ...
Genome biology 15, 1-3, 2014
2572014
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Nucleic Acids Research 50 (W1), W345-W351, 2022
2282022
Galaxy CloudMan: delivering cloud compute clusters
E Afgan, D Baker, N Coraor, B Chapman, A Nekrutenko, J Taylor
BMC bioinformatics 11 (12), 1-6, 2010
2252010
Community-driven data analysis training for biology
B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ...
Cell systems 6 (6), 752-758. e1, 2018
1632018
Harnessing cloud computing with Galaxy Cloud
E Afgan, D Baker, N Coraor, H Goto, IM Paul, KD Makova, A Nekrutenko, ...
Nature biotechnology 29 (11), 972-974, 2011
1402011
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space
MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ...
Cell Genomics 2 (1), 2022
782022
C ech M
E Afgan, D Baker, M Van Den Beek, D Blankenberg, D Bouvier
Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman …, 2016
512016
Galaxy: A gateway to tools in e-science
E Afgan, J Goecks, D Baker, N Coraor, ...
Guide to e-science: next generation scientific research and discovery, 145-177, 2011
382011
Grü ning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. 2016
E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Cˇech, ...
The Galaxy platform for accessible, reproducible and collaborative …, 2016
342016
No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics
D Baker, M Van Den Beek, D Blankenberg, D Bouvier, J Chilton, N Coraor, ...
PLoS pathogens 16 (8), e1008643, 2020
242020
Ready-to-use public infrastructure for global SARS-CoV-2 monitoring
W Maier, S Bray, M van den Beek, D Bouvier, N Coraor, M Miladi, B Singh, ...
Nature biotechnology 39 (10), 1178-1179, 2021
202021
Enabling cloud bursting for life sciences within galaxy
E Afgan, N Coraor, J Chilton, D Baker, J Taylor, Galaxy Team
Concurrency and Computation: Practice and Experience 27 (16), 4330-4343, 2015
152015
A reference model for deploying applications in virtualized environments
E Afgan, D Baker, G Team, A Nekrutenko, J Taylor
Concurrency and Computation: Practice and Experience 24 (12), 1349-1361, 2012
132012
Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring
W Maier, S Bray, M van den Beek, D Bouvier, N Coraor, M Miladi, B Singh, ...
BioRxiv, 2021
82021
Galaxy cluster to cloud-genomics at scale
E Afgan, D Baker, J Chilton, N Coraor, J Taylor
2014 9th Gateway Computing Environments Workshop, 47-50, 2014
72014
Antimalarial activity of primaquine operates via a twostep biochemical relay, Nat. Commun. 10 (2019) 3226
G Camarda, P Jirawatcharadech, RS Priestley, A Saif, S March, ...
5
Limb-based shape modeling and localization for autonomous navigation around small bodies
DA Baker, JW McMahon
2020 Astrodynamic Specialist Conference, Lake Tahoe, 2020
42020
A guide and best practices for R/Bioconductor tool integration in Galaxy
N Turaga, MA Freeberg, D Baker, J Chilton, Galaxy Team, A Nekrutenko, ...
F1000Research 5, 2757, 2016
22016
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