Maxwell W Libbrecht
Maxwell W Libbrecht
Assistant Professor, Computing Science, Simon Fraser University
Verified email at sfu.ca - Homepage
TitleCited byYear
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
9699*2012
A user’s guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
11172011
Machine learning applications in genetics and genomics
MW Libbrecht, WS Noble
Nature Reviews Genetics, 2015
6492015
Integrative annotation of chromatin elements from ENCODE data
MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ...
Nucleic acids research 41 (2), 827-841, 2013
4162013
Comparative analysis of metazoan chromatin organization
JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ...
Nature 512 (7515), 449, 2014
2652014
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
A Kundaje, S Kyriazopoulou-Panagiotopoulou, M Libbrecht, CL Smith, ...
Genome research 22 (9), 1735-1747, 2012
1512012
Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression
MW Libbrecht, F Ay, MM Hoffman, DM Gilbert, JA Bilmes, WS Noble
Genome Research 25, 544-557, 2015
442015
Distinct epigenetic features of differentiation-regulated replication origins
OK Smith, RG Kim, H Fu, MM Martin, CM Lin, K Utani, Y Zhang, AB Marks, ...
Epigenetics & chromatin 9 (1), 18, 2016
282016
Interferometric measurement of the resonant absorption and refractive index in rubidium gas
KG Libbrecht, MW Libbrecht
American journal of physics 74 (12), 1055-1060, 2006
272006
Nucleotide sequence and DNaseI sensitivity are predictive of 3D chromatin architecture
J Schreiber, M Libbrecht, J Bilmes, WS Noble
bioRxiv, 103614, 2017
222017
PREDICTD parallel epigenomics data imputation with cloud-based tensor decomposition
TJ Durham, MW Libbrecht, JJ Howbert, J Bilmes, WS Noble
Nature communications 9 (1), 1-15, 2018
182018
Segway 2.0: Gaussian mixture models and minibatch training
RCW Chan, MW Libbrecht, EG Roberts, JA Bilmes, WS Noble, ...
Bioinformatics 34 (4), 669-671, 2018
162018
A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types
MW Libbrecht, OL Rodriguez, Z Weng, JA Bilmes, MM Hoffman, ...
Genome biology 20 (1), 180, 2019
82019
Choosing non‐redundant representative subsets of protein sequence data sets using submodular optimization
MW Libbrecht, JA Bilmes, WS Noble
Proteins: Structure, Function, and Bioinformatics 86 (4), 454-466, 2018
62018
Choosing panels of genomics assays using submodular optimization
K Wei, MW Libbrecht, JA Bilmes, WS Noble
Genome biology 17 (1), 229, 2016
42016
Entropic graph-based posterior regularization: Extended version
MW Libbrecht, MM Hoffman, JA Bilmes, WS Noble
Proceedings of the International Conference on Machine Learning, 2015
22015
Semi-supervised segmentation and genome annotation
RCW Chan, M McNeil, EG Roberts, M Mendez, MW Libbrecht, ...
bioRxiv, 2020
2020
Variance-stabilized units for sequencing-based genomic signals
F Bayat, M Libbrecht
bioRxiv, 2020
2020
Supplement to “A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types”
MW Libbrecht
University of Washington, 2019
2019
Identifying differential cell populations in flow cytometry data accounting for marker frequency
A Yue, C Chauve, M Libbrecht, R Brinkman
BioRxiv, 837765, 2019
2019
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Articles 1–20