Aedin Culhane
Aedin Culhane
Dept of Data Science, Dana-Farber Cancer Institute/ Dept of Biostatistics, Harvard TH Chan School
Verified email at ds.dfci.harvard.edu - Homepage
Title
Cited by
Cited by
Year
The immune landscape of cancer
V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ...
Immunity 48 (4), 812-830. e14, 2018
12492018
Apoptosis: molecular regulation of cell death
AJ Hale, CA Smith, LC Sutherland, VEA Stoneman, VL Longthorne, ...
European Journal of Biochemistry 236 (1), 1-26, 1996
9111996
RAP80 targets BRCA1 to specific ubiquitin structures at DNA damage sites
B Sobhian, G Shao, DR Lilli, AC Culhane, LA Moreau, B Xia, ...
Science 316 (5828), 1198-1202, 2007
6812007
Repeatability of published microarray gene expression analyses
JPA Ioannidis, DB Allison, CA Ball, I Coulibaly, X Cui, AC Culhane, ...
Nature genetics 41 (2), 149, 2009
5662009
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data
IB Jeffery, DG Higgins, AC Culhane
BMC bioinformatics 7 (1), 1-16, 2006
4772006
MADE4: an R package for multivariate analysis of gene expression data
AC Culhane, J Thioulouse, G Perrière, DG Higgins
Bioinformatics 21 (11), 2789-2790, 2005
3202005
A three-gene model to robustly identify breast cancer molecular subtypes
B Haibe-Kains, C Desmedt, S Loi, AC Culhane, G Bontempi, ...
Journal of the National Cancer Institute 104 (4), 311-325, 2012
2962012
survcomp: an R/Bioconductor package for performance assessment and comparison of survival models
MS Schröder, AC Culhane, J Quackenbush, B Haibe-Kains
Bioinformatics 27 (22), 3206-3208, 2011
2602011
Between-group analysis of microarray data
AC Culhane, G Perriere, EC Considine, TG Cotter, DG Higgins
Bioinformatics 18 (12), 1600-1608, 2002
2562002
Dimension reduction techniques for the integrative analysis of multi-omics data
C Meng, OA Zeleznik, GG Thallinger, B Kuster, AM Gholami, AC Culhane
Briefings in bioinformatics 17 (4), 628-641, 2016
2082016
Taxonomy of breast cancer based on normal cell phenotype predicts outcome
S Santagata, A Thakkar, A Ergonul, B Wang, T Woo, R Hu, JC Harrell, ...
The Journal of clinical investigation 124 (2), 859-870, 2014
1852014
A multivariate approach to the integration of multi-omics datasets
C Meng, B Kuster, AC Culhane, AM Gholami
BMC bioinformatics 15 (1), 1-13, 2014
1752014
Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments
M Kapushesky, T Adamusiak, T Burdett, A Culhane, A Farne, A Filippov, ...
Nucleic acids research 40 (D1), D1077-D1081, 2012
1752012
Cross-platform comparison and visualisation of gene expression data using co-inertia analysis
AC Culhane, G Perrière, DG Higgins
BMC bioinformatics 4 (1), 1-15, 2003
1712003
Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples
M Riester, W Wei, L Waldron, AC Culhane, L Trippa, E Oliva, S Kim, ...
JNCI: Journal of the National Cancer Institute 106 (5), 2014
1582014
Proliferative genes dominate malignancy-risk gene signature in histologically-normal breast tissue
DT Chen, A Nasir, A Culhane, C Venkataramu, W Fulp, R Rubio, T Wang, ...
Breast cancer research and treatment 119 (2), 335-346, 2010
1542010
Analysis of differential gene expression in colorectal cancer and stroma using fluorescence-activated cell sorting purification
MJ Smith, AC Culhane, M Donovan, JC Coffey, BD Barry, MA Kelly, ...
British journal of cancer 100 (9), 1452-1464, 2009
1532009
Expression Profiler: next generation—an online platform for analysis of microarray data
M Kapushesky, P Kemmeren, AC Culhane, S Durinck, J Ihmels, C Körner, ...
Nucleic acids research 32 (suppl_2), W465-W470, 2004
1482004
Profiles of genomic instability in high-grade serous ovarian cancer predict treatment outcome
ZC Wang, NJ Birkbak, AC Culhane, R Drapkin, A Fatima, R Tian, ...
Clinical cancer research 18 (20), 5806-5815, 2012
1412012
Epithelial progeny of estrogen-exposed breast progenitor cells display a cancer-like methylome
ASL Cheng, AC Culhane, MWY Chan, CR Venkataramu, M Ehrich, ...
Cancer research 68 (6), 1786-1796, 2008
1402008
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