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Charles G. Danko
Charles G. Danko
Associate Professor, Cornell University
Verified email at cornell.edu - Homepage
Title
Cited by
Cited by
Year
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
LJ Core, AL Martins, CG Danko, CT Waters, A Siepel, JT Lis
Nature genetics 46 (12), 1311-1320, 2014
6792014
Bayesian inference of ancient human demography from individual genome sequences
I Gronau, MJ Hubisz, B Gulko, CG Danko, A Siepel
Nature genetics 43 (10), 1031-1034, 2011
6482011
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
N Hah, CG Danko, L Core, JJ Waterfall, A Siepel, JT Lis, WL Kraus
Cell 145 (4), 622-634, 2011
5432011
Complete Khoisan and Bantu genomes from southern Africa
SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ...
Nature 463 (7283), 943-947, 2010
5242010
Enhancer transcripts mark active estrogen receptor binding sites
N Hah, S Murakami, A Nagari, CG Danko, WL Kraus
Genome research 23 (8), 1210-1223, 2013
4792013
Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)
DB Mahat, H Kwak, GT Booth, IH Jonkers, CG Danko, RK Patel, ...
Nature protocols 11 (8), 1455-1476, 2016
4382016
Mammalian heat shock response and mechanisms underlying its genome-wide transcriptional regulation
DB Mahat, HH Salamanca, FM Duarte, CG Danko, JT Lis
Molecular cell 62 (1), 63-78, 2016
3762016
Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells
CG Danko, N Hah, X Luo, AL Martins, L Core, JT Lis, A Siepel, WL Kraus
Molecular cell 50 (2), 212-222, 2013
3692013
A unified architecture of transcriptional regulatory elements
R Andersson, A Sandelin, CG Danko
Trends in Genetics 31 (8), 426-433, 2015
2172015
Identification of active transcriptional regulatory elements from GRO-seq data
CG Danko, SL Hyland, LJ Core, AL Martins, CT Waters, HW Lee, ...
Nature methods 12 (5), 433-438, 2015
2032015
Transcriptional response to stress is pre-wired by promoter and enhancer architecture
A Vihervaara, DB Mahat, MJ Guertin, T Chu, CG Danko, JT Lis, L Sistonen
Nature communications 8 (1), 255, 2017
1522017
Cell type and gene expression deconvolution with BayesPrism enables Bayesian integrative analysis across bulk and single-cell RNA sequencing in oncology
T Chu, Z Wang, D Pe’er, CG Danko
Nature Cancer 3 (4), 505-517, 2022
1382022
Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme
T Chu, EJ Rice, GT Booth, HH Salamanca, Z Wang, LJ Core, SL Longo, ...
Nature genetics 50 (11), 1553-1564, 2018
1182018
GAGA factor maintains nucleosome-free regions and has a role in RNA polymerase II recruitment to promoters
NJ Fuda, MJ Guertin, S Sharma, CG Danko, AL Martins, A Siepel, JT Lis
PLoS genetics 11 (3), e1005108, 2015
1112015
Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry
JJ Lewis, RC Geltman, PC Pollak, KE Rondem, SM Van Belleghem, ...
Proceedings of the National Academy of Sciences 116 (48), 24174-24183, 2019
1102019
Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock
J Ray, PR Munn, A Vihervaara, JJ Lewis, A Ozer, CG Danko, JT Lis
Proceedings of the National Academy of Sciences 116 (39), 19431-19439, 2019
952019
Identification of regulatory elements from nascent transcription using dREG
Z Wang, T Chu, LA Choate, CG Danko
Genome research 29 (2), 293-303, 2019
852019
Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells
M Saikia, P Burnham, SH Keshavjee, MFZ Wang, M Heyang, ...
Nature methods 16 (1), 59-62, 2019
772019
Gene regulation by CcpA and catabolite repression explored by RNA-Seq in Streptococcus mutans
L Zeng, SC Choi, CG Danko, A Siepel, MJ Stanhope, RA Burne
PloS one 8 (3), e60465, 2013
692013
Prediction of histone post-translational modification patterns based on nascent transcription data
Z Wang, AG Chivu, LA Choate, EJ Rice, DC Miller, T Chu, SP Chou, ...
Nature genetics 54 (3), 295-305, 2022
68*2022
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