Jakub Westholm
Jakub Westholm
Researcher, SciLifeLab/Stockholm University
Verified email at
Cited by
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Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
PL Ståhl, F Salmén, S Vickovic, A Lundmark, J Fernández Navarro, ...
Science 353 (6294), 78-82, 2016
Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation
JO Westholm, P Miura, S Olson, S Shenker, B Joseph, P Sanfilippo, ...
Cell reports 9 (5), 1966-1980, 2014
Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
PL Stahl, F Salmén, S Vickovic, A Lundmark, JF Navarro, J Magnusson, ...
Science 353 (6294), 78-82, 2016
Vive la différence: biogenesis and evolution of microRNAs in plants and animals
MJ Axtell, JO Westholm, EC Lai
Genome biology 12 (4), 221, 2011
Mirtrons: microRNA biogenesis via splicing
JO Westholm, EC Lai
Biochimie, 2011
Widespread and extensive lengthening of 3′ UTRs in the mammalian brain
P Miura, S Shenker, C Andreu-Agullo, JO Westholm, EC Lai
Genome research 23 (5), 812-825, 2013
Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
E Berezikov, N Robine, A Samsonova, JO Westholm, A Naqvi, JH Hung, ...
Genome research 21 (2), 203-215, 2011
Global patterns of tissue-specific alternative polyadenylation in Drosophila
P Smibert, P Miura, JO Westholm, S Shenker, G May, MO Duff, D Zhang, ...
Cell reports 1 (3), 277-289, 2012
Discovery of hundreds of mirtrons in mouse and human small RNA data
E Ladewig, K Okamura, AS Flynt, JO Westholm, EC Lai
Genome research 22 (9), 1634-1645, 2012
Endocan is a VEGF-A and PI3K regulated gene with increased expression in human renal cancer
E Rennel, S Mellberg, A Dimberg, L Petersson, J Botling, A Ameur, ...
Experimental cell research 313 (7), 1285-1294, 2007
Heterogeneity and interplay of the extracellular vesicle small RNA transcriptome and proteome
H Sork, G Corso, K Krjutskov, HJ Johansson, JZ Nordin, OPB Wiklander, ...
Scientific reports 8 (1), 10813, 2018
Transcriptional profiling reveals a critical role for tyrosine phosphatase VE‐PTP in regulation of VEGFR2 activity and endothelial cell morphogenesis
S Mellberg, A Dimberg, F Bahram, M Hayashi, E Rennel, A Ameur, ...
The FASEB Journal 23 (5), 1490-1502, 2009
Combinatorial control of gene expression by the three yeast repressors Mig1, Mig2 and Mig3
JO Westholm, N Nordberg, E Murén, A Ameur, J Komorowski, H Ronne
BMC genomics 9, 1-15, 2008
Acute sleep loss results in tissue-specific alterations in genome-wide DNA methylation state and metabolic fuel utilization in humans
J Cedernaes, M Schönke, JO Westholm, J Mi, A Chibalin, S Voisin, ...
Science advances 4 (8), eaar8590, 2018
Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans
WJ Chung, P Agius, JO Westholm, M Chen, K Okamura, N Robine, ...
Genome Research 21 (2), 286-300, 2011
Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs
JO Westholm, E Ladewig, K Okamura, N Robine, EC Lai
Rna 18 (2), 177-192, 2012
The BEN domain is a novel sequence-specific DNA-binding domain conserved in neural transcriptional repressors
Q Dai, A Ren, JO Westholm, AA Serganov, DJ Patel, EC Lai
Genes & development 27 (6), 602-614, 2013
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
J Wen, J Mohammed, D Bortolamiol-Becet, H Tsai, N Robine, ...
Genome research 24 (7), 1236-1250, 2014
Neurophysiological Defects and Neuronal Gene Deregulation in Drosophila mir-124 Mutants
K Sun, JO Westholm, K Tsurudome, JW Hagen, Y Lu, M Kohwi, D Betel, ...
PLoS genetics 8 (2), e1002515, 2012
Histone modifications influence mediator interactions with chromatin
X Zhu, Y Zhang, G Bjornsdottir, Z Liu, A Quan, M Costanzo, ...
Nucleic acids research 39 (19), 8342-8354, 2011
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