Alex Dickson
Alex Dickson
Assistant Professor, Department of Biochemistry & Molecular Biology, Michigan State University
Verified email at msu.edu - Homepage
Title
Cited by
Cited by
Year
Enhanced sampling of nonequilibrium steady states
A Dickson, AR Dinner
Annual review of physical chemistry 61, 441-459, 2010
822010
Nonequilibrium umbrella sampling in spaces of many order parameters
A Dickson, A Warmflash, AR Dinner
The Journal of chemical physics 130 (7), 02B605, 2009
722009
Unbiased molecular dynamics of 11 min timescale drug unbinding reveals transition state stabilizing interactions
SD Lotz, A Dickson
Journal of the American Chemical Society 140 (2), 618-628, 2018
712018
WExplore: Hierarchical Exploration of High-Dimensional Spaces Using the Weighted Ensemble Algorithm
A Dickson, CL Brooks III
Journal of Physical Chemistry B, 2014
692014
Separating forward and backward pathways in nonequilibrium umbrella sampling
A Dickson, A Warmflash, AR Dinner
The Journal of chemical physics 131 (15), 154104, 2009
672009
Multiple ligand unbinding pathways and ligand-induced destabilization revealed by WExplore
A Dickson, SD Lotz
Biophysical journal 112 (4), 620-629, 2017
632017
Ligand release pathways obtained with WExplore: residence times and mechanisms
A Dickson, SD Lotz
The Journal of Physical Chemistry B 120 (24), 5377-5385, 2016
502016
Native states of fast-folding proteins are kinetic traps
A Dickson, CL Brooks III
Journal of the American Chemical Society 135 (12), 4729-4734, 2013
462013
The SAMPL6 SAMPLing challenge: assessing the reliability and efficiency of binding free energy calculations
A Rizzi, T Jensen, DR Slochower, M Aldeghi, V Gapsys, D Ntekoumes, ...
Journal of computer-aided molecular design 34 (5), 601-633, 2020
372020
Flow-dependent unfolding and refolding of an RNA by nonequilibrium umbrella sampling
A Dickson, M Maienschein-Cline, A Tovo-Dwyer, JR Hammond, ...
Journal of chemical theory and computation 7 (9), 2710-2720, 2011
362011
Isothermal analysis of ThermoFluor data can readily provide quantitative binding affinities
N Bai, H Roder, A Dickson, J Karanicolas
Scientific reports 9 (1), 1-15, 2019
282019
Kinetics of ligand binding through advanced computational approaches: a review
A Dickson, P Tiwary, H Vashisth
Current topics in medicinal chemistry 17 (23), 2626-2641, 2017
272017
Quantifying hub-like behavior in protein folding networks
A Dickson, CL Brooks
Journal of Chemical Theory and Computation, 2012
272012
Efficient in silico exploration of RNA interhelical conformations using Euler angles and WExplore
A Dickson, AM Mustoe, L Salmon, CL Brooks
Nucleic acids research 42, 97-110, 2014
232014
Predicting ligand binding affinity using on-and off-rates for the SAMPL6 SAMPLing challenge
T Dixon, SD Lotz, A Dickson
Journal of computer-aided molecular design 32 (10), 1001-1012, 2018
222018
Multiscale modeling of a conditionally disordered pH-sensing chaperone
LS Ahlstrom, SM Law, A Dickson, CL Brooks III
Journal of molecular biology 427 (8), 1670-1680, 2015
222015
Mapping the Ligand Binding Landscape
A Dickson
Biophysical Journal 115 (9), 1707-1719, 2018
212018
Capturing a dynamic chaperone–substrate interaction using NMR-informed molecular modeling
L Salmon, LS Ahlstrom, S Horowitz, A Dickson, CL Brooks III, ...
Journal of the American Chemical Society 138 (31), 9826-9839, 2016
212016
Coupled folding and binding with 2D Window‐Exchange Umbrella Sampling
A Dickson, LS Ahlstrom, CL Brooks III
Journal of computational chemistry 37 (6), 587-594, 2016
182016
Binding and folding of the small bacterial chaperone HdeA
LS Ahlstrom, A Dickson, CL Brooks III
The Journal of Physical Chemistry B 117 (42), 13219-13225, 2013
162013
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