Peter Cock
Peter Cock
James Hutton Institute (formerly known as the Scottish Crop Research Institute)
Verified email at hutton.ac.uk - Homepage
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Year
Biopython: freely available Python tools for computational molecular biology and bioinformatics
PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ...
Bioinformatics 25 (11), 1422-1423, 2009
21472009
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
PJA Cock, CJ Fields, N Goto, ML Heuer, PM Rice
Nucleic acids research 38 (6), 1767-1771, 2010
12542010
Using Tablet for visual exploration of second-generation sequencing data
I Milne, G Stephen, M Bayer, PJA Cock, L Pritchard, L Cardle, PD Shaw, ...
Briefings in Bioinformatics 14 (2), 193-202, 2013
6212013
Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus
T Kikuchi, JA Cotton, JJ Dalzell, K Hasegawa, N Kanzaki, P McVeigh, ...
PLoS pathogens 7 (9), 2011
2912011
Identification and localisation of the NB-LRR gene family within the potato genome
F Jupe, L Pritchard, GJ Etherington, K MacKenzie, PJA Cock, F Wright, ...
BMC genomics 13 (1), 75, 2012
2312012
Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB‐LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating …
F Jupe, K Witek, W Verweij, J Śliwka, L Pritchard, GJ Etherington, ...
The Plant Journal 76 (3), 530-544, 2013
2152013
The genome and life-stage specific transcriptomes of Globodera pallidaelucidate key aspects of plant parasitism by a cyst nematode
JA Cotton, CJ Lilley, LM Jones, T Kikuchi, AJ Reid, P Thorpe, IJ Tsai, ...
Genome biology 15 (3), R43, 2014
1512014
Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology
PJA Cock, BA Grüning, K Paszkiewicz, L Pritchard
PeerJ 1, e167, 2013
1072013
Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida
JT Jones, A Kumar, LA Pylypenko, A Thirugnanasambandam, L Castelli, ...
Molecular plant pathology 10 (6), 815-828, 2009
962009
Bio. Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython
E Talevich, BM Invergo, PJA Cock, BA Chapman
BMC bioinformatics 13 (1), 209, 2012
952012
The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence
S Eves-van den Akker, DR Laetsch, P Thorpe, CJ Lilley, EGJ Danchin, ...
Genome biology 17 (1), 124, 2016
862016
NCBI BLAST+ integrated into Galaxy
PJA Cock, JM Chilton, B Grüning, JE Johnson, N Soranzo
Gigascience 4 (1), s13742-015-0080-7, 2015
732015
Evolution of prokaryotic two-component systems: insights from comparative genomics
DE Whitworth, PJA Cock
Amino acids 37 (3), 459-466, 2009
642009
Evolution of prokaryotic two-component system signaling pathways: gene fusions and fissions
PJA Cock, DE Whitworth
Molecular biology and evolution 24 (11), 2355-2357, 2007
632007
Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA
WJ McGavin, C Mitchell, PJA Cock, KM Wright, SA MacFarlane
Journal of General Virology 93 (2), 430-437, 2012
622012
Two-component signal transduction systems of the myxobacteria: structure, diversity and evolutionary relationships
DE Whitworth, PJA Cock
Microbiology 154 (2), 360-372, 2008
572008
Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets
P Thorpe, PJA Cock, J Bos
BMC genomics 17 (1), 172, 2016
552016
Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors
RR McNally, IK Toth, PJA Cock, L Pritchard, PE Hedley, JA Morris, Y Zhao, ...
Molecular plant pathology 13 (2), 160-173, 2012
542012
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ...
Journal of biomedical semantics 5, 5, 2014
502014
Distinct circular single-stranded DNA viruses exist in different soil types
B Reavy, MM Swanson, PJA Cock, L Dawson, TE Freitag, BK Singh, ...
Appl. Environ. Microbiol. 81 (12), 3934-3945, 2015
472015
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Articles 1–20