Peter Cock
Peter Cock
James Hutton Institute (formerly known as the Scottish Crop Research Institute)
Verified email at - Homepage
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Biopython: freely available Python tools for computational molecular biology and bioinformatics
PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ...
Bioinformatics 25 (11), 1422-1423, 2009
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
PJA Cock, CJ Fields, N Goto, ML Heuer, PM Rice
Nucleic acids research 38 (6), 1767-1771, 2010
Using Tablet for visual exploration of second-generation sequencing data
I Milne, G Stephen, M Bayer, PJA Cock, L Pritchard, L Cardle, PD Shaw, ...
Briefings in Bioinformatics 14 (2), 193-202, 2013
Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus
T Kikuchi, JA Cotton, JJ Dalzell, K Hasegawa, N Kanzaki, P McVeigh, ...
PLoS pathogens 7 (9), e1002219, 2011
Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB‐LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating …
F Jupe, K Witek, W Verweij, J Śliwka, L Pritchard, GJ Etherington, ...
The Plant Journal 76 (3), 530-544, 2013
Identification and localisation of the NB-LRR gene family within the potato genome
F Jupe, L Pritchard, GJ Etherington, K MacKenzie, PJA Cock, F Wright, ...
BMC genomics 13 (1), 1-14, 2012
The genome and life-stage specific transcriptomes of Globodera pallidaelucidate key aspects of plant parasitism by a cyst nematode
JA Cotton, CJ Lilley, LM Jones, T Kikuchi, AJ Reid, P Thorpe, IJ Tsai, ...
Genome biology 15 (3), 1-17, 2014
The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence
S Eves-van den Akker, DR Laetsch, P Thorpe, CJ Lilley, EGJ Danchin, ...
Genome biology 17 (1), 1-23, 2016
NCBI BLAST+ integrated into Galaxy
PJA Cock, JM Chilton, B Grüning, JE Johnson, N Soranzo
Gigascience 4 (1), s13742-015-0080-7, 2015
Bio. Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython
E Talevich, BM Invergo, PJA Cock, BA Chapman
BMC bioinformatics 13 (1), 1-9, 2012
Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology
PJA Cock, BA Grüning, K Paszkiewicz, L Pritchard
PeerJ 1, e167, 2013
Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida
JT Jones, A Kumar, LA Pylypenko, A Thirugnanasambandam, L Castelli, ...
Molecular Plant Pathology 10 (6), 815-828, 2009
Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA
WJ McGavin, C Mitchell, PJA Cock, KM Wright, SA MacFarlane
Journal of General Virology 93 (2), 430-437, 2012
Identification and characterization of parasitism genes from the pinewood nematode Bursaphelenchus xylophilus reveals a multilayered detoxification strategy
M Espada, AC Silva, S Eves van den Akker, PJA Cock, M Mota, JT Jones
Molecular plant pathology 17 (2), 286-295, 2016
Evolution of prokaryotic two-component system signaling pathways: gene fusions and fissions
PJA Cock, DE Whitworth
Molecular biology and evolution 24 (11), 2355-2357, 2007
Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets
P Thorpe, PJA Cock, J Bos
BMC genomics 17 (1), 1-18, 2016
Evolution of prokaryotic two-component systems: insights from comparative genomics
DE Whitworth, PJA Cock
Amino acids 37 (3), 459-466, 2009
Two-component signal transduction systems of the myxobacteria: structure, diversity and evolutionary relationships
DE Whitworth, PJA Cock
Microbiology 154 (2), 360-372, 2008
Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors
RR McNally, IK Toth, PJA Cock, L Pritchard, PE Hedley, JA Morris, Y Zhao, ...
Molecular plant pathology 13 (2), 160-173, 2012
Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida
P Thorpe, S Mantelin, PJA Cock, VC Blok, MC Coke, ...
BMC genomics 15 (1), 1-15, 2014
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