Rafal Gumienny
Rafal Gumienny
University of Basel, Biozentrum
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Cited by
Cited by
SWISS-MODEL: homology modelling of protein structures and complexes
A Waterhouse, M Bertoni, S Bienert, G Studer, G Tauriello, R Gumienny, ...
Nucleic acids research 46 (W1), W296-W303, 2018
QMEANDisCo—distance constraints applied on model quality estimation
G Studer, C Rempfer, AM Waterhouse, R Gumienny, J Haas, T Schwede
Bioinformatics 36 (6), 1765-1771, 2020
An updated human snoRNAome
H Jorjani, S Kehr, DJ Jedlinski, R Gumienny, J Hertel, PF Stadler, ...
Nucleic acids research 44 (11), 5068-5082, 2016
Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells
AR Gruber, G Martin, P Müller, A Schmidt, AJ Gruber, R Gumienny, ...
Nature communications 5 (1), 1-10, 2014
Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12
J Haas, A Barbato, D Behringer, G Studer, S Roth, M Bertoni, K Mostaguir, ...
Proteins: Structure, Function, and Bioinformatics 86, 387-398, 2018
Accurate transcriptome-wide prediction of microRNA targets and small interfering RNA off-targets with MIRZA-G
R Gumienny, M Zavolan
Nucleic acids research 43 (3), 1380-1391, 2015
High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq
R Gumienny, DJ Jedlinski, A Schmidt, F Gypas, G Martin, A Vina-Vilaseca, ...
Nucleic acids research 45 (5), 2341-2353, 2017
Quantifying the strength of miRNA–target interactions
J Breda, AJ Rzepiela, R Gumienny, E van Nimwegen, M Zavolan
Methods 85, 90-99, 2015
Introducing “best single template” models as reference baseline for the Continuous Automated Model Evaluation (CAMEO)
J Haas, R Gumienny, A Barbato, F Ackermann, G Tauriello, M Bertoni, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1378-1387, 2019
Continuous Automated Model EvaluatiOn (CAMEO)—Perspectives on the future of fully automated evaluation of structure prediction methods
X Robin, J Haas, R Gumienny, A Smolinski, G Tauriello, T Schwede
Proteins: Structure, Function, and Bioinformatics 89 (12), 1977-1986, 2021
Workflows for continuous protein structure prediction benchmarking
J Haas, R Gumienny, X Robin, A Smolinski, T Schwede
F1000Research 8, 2019
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