Följ
James M. Ferguson
James M. Ferguson
Genomic Systems Analyst, Garvan Institute
Verifierad e-postadress på garvan.org.au
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High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes
M Singh, G Al-Eryani, S Carswell, JM Ferguson, J Blackburn, K Barton, ...
Nature communications 10 (1), 1-13, 2019
2622019
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis
RA Bull, TN Adikari, JM Ferguson, JM Hammond, I Stevanovski, ...
Nature communications 11 (1), 6272, 2020
2342020
Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing
I Stevanovski, SR Chintalaphani, H Gamaarachchi, JM Ferguson, ...
Science advances 8 (9), eabm5386, 2022
862022
Molecular barcoding of native RNAs using nanopore sequencing and deep learning
MA Smith, T Ersavas, JM Ferguson, H Liu, MC Lucas, O Begik, L Bojarski, ...
Genome Research 30 (9), 1345-1353, 2020
60*2020
Fast nanopore sequencing data analysis with SLOW5
H Gamaarachchi, H Samarakoon, SP Jenner, JM Ferguson, TG Amos, ...
Nature biotechnology 40 (7), 1026-1029, 2022
502022
DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity
Q Du, GC Smith, PL Luu, JM Ferguson, NJ Armstrong, CE Caldon, ...
Cell Reports 36 (12), 2021
442021
Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome
RJ Edwards, MA Field, JM Ferguson, O Dudchenko, J Keilwagen, ...
BMC genomics 22, 1-19, 2021
302021
Genopo: a nanopore sequencing analysis toolkit for portable Android devices
H Samarakoon, S Punchihewa, A Senanayake, JM Hammond, ...
Communications biology 3 (1), 538, 2020
202020
SquiggleKit: a toolkit for manipulating nanopore signal data
JM Ferguson, MA Smith
Bioinformatics 35 (24), 5372-5373, 2019
202019
InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses
JM Ferguson, H Gamaarachchi, T Nguyen, A Gollon, S Tong, ...
Bioinformatics 38 (5), 1443-1446, 2022
142022
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis. Nat Commun 11: 6272
RA Bull, TN Adikari, JM Ferguson, JM Hammond, I Stevanovski, ...
112020
Flexible and efficient handling of nanopore sequencing signal data with slow5tools
H Samarakoon, JM Ferguson, SP Jenner, TG Amos, S Parameswaran, ...
Genome Biology 24 (1), 69, 2023
102023
Accelerated nanopore basecalling with SLOW5 data format
H Samarakoon, JM Ferguson, H Gamaarachchi, IW Deveson
Bioinformatics 39 (6), btad352, 2023
72023
Squigulator: Simulation of nanopore sequencing signal data with tunable noise parameters
H Gamaarachchi, JM Ferguson, H Samarakoon, K Liyanage, IW Deveson
bioRxiv, 2023.05. 09.539953, 2023
62023
Epidemiological and genomic analysis of a Sydney hospital COVID-19 outbreak
E Tennant, M Figtree, J Tallon, RA Bull, M Yeang, IW Deveson, ...
medRxiv, 2021.02. 17.21251943, 2021
32021
CAR+ and CAR T cells share a differentiation trajectory into an NK-like subset after CD19 CAR T cell infusion in patients with B cell malignancies
RHY Louie, C Cai, J Samir, M Singh, IW Deveson, JM Ferguson, TG Amos, ...
Nature Communications 14 (1), 7767, 2023
12023
Nanopore Sequencing and Data AnalysisData analyses for Base-Resolution Genome-Wide 5-Methylcytosine ProfilingGenome-wide 5-methylcytosine profiling
A Angeloni, J Ferguson, O Bogdanovic
Chromatin: Methods and Protocols, 75-94, 2022
12022
Interactive visualisation of raw nanopore signal data with Squigualiser
H Samarakoon, K Liyanage, JM Ferguson, S Parameswaran, ...
bioRxiv, 2024.02. 19.581111, 2024
2024
HIVepsilon-seq—scalable characterization of intact persistent proviral HIV reservoirs in women
K Barton, JM Ferguson, IW Deveson, SD Falcinelli, KS James, J Kirchherr, ...
Journal of Virology 97 (11), e00705-23, 2023
2023
Processing of sequencing data streams
M Smith, J Ferguson, D Bunadi
US Patent 11,567,944, 2023
2023
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Artiklar 1–20