Filipe de Portugal S. T. de Sousa
Filipe de Portugal S. T. de Sousa
CE3C, Universidade de Lisboa
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Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
J Bengtsson‐Palme, M Ryberg, M Hartmann, S Branco, Z Wang, A Godhe, ...
Methods in ecology and evolution 4 (10), 914-919, 2013
A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts
RH Nilsson, L Tedersoo, M Ryberg, E Kristiansson, M Hartmann, ...
Microbes and environments, ME14121, 2015
Improving ITS sequence data for identification of plant pathogenic fungi
RH Nilsson, KD Hyde, J Pawłowska, M Ryberg, L Tedersoo, AB Aas, ...
Fungal Diversity 67 (1), 11-19, 2014
Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.)
F de Sousa, PG Foster, PCJ Donoghue, H Schneider, CJ Cox
New Phytologist 222 (1), 565-575, 2019
Phylogenetic Properties of 50 Nuclear Loci in Medicago (Leguminosae) Generated Using Multiplexed Sequence Capture and Next-Generation Sequencing
F de Sousa, YJK Bertrand, S Nylinder, B Oxelman, JS Eriksson, BE Pfeil
PloS one 9 (10), e109704, 2014
Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)
JS Eriksson, F Sousa, YJK Bertrand, A Antonelli, B Oxelman, BE Pfeil
BMC Evolutionary Biology 18, 2018
Assignment of Homoeologs to Parental Genomes in Allopolyploids for Species Tree Inference, with an Example from Fumaria (Papaveraceae)
YJK Bertrand, AC Scheen, T Marcussen, BE Pfeil, F de Sousa, B Oxelman
Systematic Biology 64 (3), 448-471, 2015
Patterns of phylogenetic incongruence in Medicago found among six loci
F de Sousa, YJK Bertrand, BE Pfeil
Plant Systematics and Evolution 302 (5), 493-513, 2016
A cryptic species produced by autopolyploidy and subsequent introgression involving Medicago prostrata (Fabaceae)
JS Eriksson, JL Blanco-Pastor, F Sousa, YJK Bertrand, BE Pfeil
Molecular Phylogenetics and Evolution 107, 367-381, 2017
The mitochondrial phylogeny of land plants shows support for Setaphyta under composition-heterogeneous substitution models
F Sousa, P Civáň, J Brazão, PG Foster, CJ Cox
PeerJ 8, e8995, 2020
The use of chloroplast genome sequences to solve phylogenetic incongruences in Polystachya Hook (Orchidaceae Juss)
NL de Abreu, RJV Alves, SRS Cardoso, YJK Bertrand, F Sousa, CF Hall, ...
PeerJ 6, e4916, 2018
Using Genomic Location and Coalescent Simulation to Investigate Gene Tree Discordance in Medicago L.
F Sousa, YJK Bertrand, JJ Doyle, B Oxelman, BE Pfeil
Systematic Biology 66 (6), 934-949, 2017
A revision of the South American genus Apuleia (Leguminosae, Cassieae)
FPST de Sousa, GP Lewis, JA Hawkins
Kew Bulletin 65 (2), 225-232, 2010
The chloroplast land plant phylogeny: analyses employing better-fitting tree-and site-heterogeneous composition models
F Sousa, P Civáň, PG Foster, CJ Cox
Frontiers in plant science 11, 1062, 2020
Increased evolutionary rates and conserved transcriptional response following allopolyploidization in brown algae
F Sousa, J Neiva, N Martins, R Jacinto, L Anderson, PT Raimondi, ...
Evolution 73 (1), 59-72, 2019
Next-generation Molecular Systematics and Evolution: Insights into Medicago
F Sousa
Cyphostemma mendesii (Vitaceae), a new species from Angola
F De Sousa, E Figueiredo, GF Smith
Phytotaxa 7 (1), 35–39-35–39, 2010
The genus Cyphostemma (Planch.) Alston (Vitaceae) in Angola
F De Sousa, E Figueiredo, GF Smith
Bradleya 2011 (29), 79-92, 2011
Vitaceae. A new and an overlooked record of Cyphostemma in Angola
F De Sousa, E Figueiredo, GF Smith
National Botanical Institute, 2011
Population structure in Quercus suber L. revealed by nuclear microsatellite markers
F Sousa, J Costa, C Ribeiro, M Varandas, F Pina-Martins, F Simões, ...
PeerJ 10, e13565, 2022
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