| Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data JE O'Reilly, MN Puttick, L Parry, AR Tanner, JE Tarver, J Fleming, ... Biology letters 12 (4), 20160081, 2016 | 206 | 2016 |
| Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data MN Puttick, JE O'Reilly, AR Tanner, JF Fleming, J Clark, L Holloway, ... Proceedings of the Royal Society B: Biological Sciences 284 (1846), 20162290, 2017 | 136 | 2017 |
| Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling J Lozano-Fernandez, M Giacomelli, JF Fleming, A Chen, J Vinther, ... Genome Biology and Evolution 11 (8), 2055-2070, 2019 | 102 | 2019 |
| Parsimony and maximum-likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: a response to Brown et al. MN Puttick, JE O'Reilly, D Oakley, AR Tanner, JF Fleming, J Clark, ... Proceedings of the Royal Society B: Biological Sciences 284 (1864), 20171636, 2017 | 27 | 2017 |
| The Ediacaran origin of Ecdysozoa: integrating fossil and phylogenomic data RJ Howard, M Giacomelli, J Lozano-Fernandez, GD Edgecombe, ... Journal of the Geological Society 179 (4), jgs2021-107, 2022 | 25 | 2022 |
| Molecular palaeontology illuminates the evolution of ecdysozoan vision JF Fleming, RM Kristensen, MV Sørensen, TYS Park, K Arakawa, ... Proceedings of the Royal Society B 285 (1892), 20182180, 2018 | 24 | 2018 |
| A novel approach to investigate the effect of tree reconstruction artifacts in single-gene analysis clarifies opsin evolution in nonbilaterian metazoans JF Fleming, R Feuda, NW Roberts, D Pisani Genome biology and evolution 12 (2), 3906-3916, 2020 | 20 | 2020 |
| Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences D Yu, Y Ren, M Uesaka, AJS Beavan, M Muffato, J Shen, Y Li, I Sato, ... Nature Ecology & Evolution, 1-17, 2024 | 14* | 2024 |
| Systematics of tardigrada: A reanalysis of tardigrade taxonomy with specific reference to Guil et al.(2019) JF Fleming, K Arakawa Zoologica scripta 50 (3), 376-382, 2021 | 14 | 2021 |
| Comprehensive transcriptome sequencing of Tanaidacea with proteomic evidences for their silk K Kakui, JF Fleming, M Mori, Y Fujiwara, K Arakawa Genome biology and evolution 13 (12), evab281, 2021 | 13 | 2021 |
| Eye-transcriptome and genome-wide sequencing for Scolecophidia: implications for inferring the visual system of the ancestral snake DJ Gower, JF Fleming, D Pisani, FJ Vonk, HMI Kerkkamp, L Peichl, ... Genome biology and evolution 13 (12), evab253, 2021 | 8 | 2021 |
| Identifying and addressing methodological incongruence in phylogenomics: A review JF Fleming, A Valero‐Gracia, TH Struck Evolutionary Applications 16 (6), 1087-1104, 2023 | 6 | 2023 |
| nRCFV: a new, dataset-size-independent metric to quantify compositional heterogeneity in nucleotide and amino acid datasets JF Fleming, TH Struck BMC bioinformatics 24 (1), 145, 2023 | 5 | 2023 |
| The wealth of shared resources: improving molecular taxonomy using eDNA and public databases JF Fleming Zoologica Scripta 52 (3), 226-234, 2023 | 3 | 2023 |
| New Tardigrade opsins and differential expression analyses show ontogenic variation in light perception JF Fleming, D Pisani, K Arakawa Genome biology and evolution 13 (8), evab164, 2021 | 3 | 2021 |
| The Evolution of Temperature and Desiccation-Related Protein Families in Tardigrada Reveals a Complex Acquisition of Extremotolerance JF Fleming, D Pisani, K Arakawa Genome Biology and Evolution 16 (1), evad217, 2024 | 2 | 2024 |
| Scoutknife: A naïve, whole genome informed phylogenetic robusticity metric J Fleming, PM Eriksen, TH Struck F1000Research 12, 945, 2023 | | 2023 |
| Hagfish genome illuminates vertebrate whole genome duplications and their evolutionary consequences J Pascual-Anaya, D Yu, Y Ren, M Uesaka, A Beavan, M Muffato, J Shen, ... | | 2023 |
| Concerning the evolution of opsin proteins, and the relationships between the families therein JF Fleming University of Bristol, 2018 | | 2018 |
| Clark, J.,... Donoghue, PCJ (2017). Parsimony and Maximum Likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary … MN Puttick, JE O’Reilly, D Oakley, AR Tanner, JF Fleming | | |
Davide PisaniProfessor of Phylogenomics. Schools of Biological & Earth Sciences. University of Bristol (UK)Verifierad e-postadress på bristol.ac.uk
