Anthony J. Cox
Anthony J. Cox
Computational Biology Group, Illumina Cambridge Ltd.
Verified email at
Cited by
Cited by
A map of human genome variation from population-scale sequencing
1000 Genomes Project Consortium
Nature 467 (7319), 1061-1073, 2010
Accurate whole human genome sequencing using reversible terminator chemistry
DR Bentley, S Balasubramanian, HP Swerdlow, GP Smith, J Milton, ...
Nature 456 (7218), 53-59, 2008
A comprehensive catalogue of somatic mutations from a human cancer genome
ED Pleasance, RK Cheetham, PJ Stephens, DJ McBride, SJ Humphray, ...
Nature 463 (7278), 191-196, 2010
SSAHA: a fast search method for large DNA databases
Z Ning, AJ Cox, JC Mullikin
Genome research 11 (10), 1725-1729, 2001
Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications
X Chen, O Schulz-Trieglaff, R Shaw, B Barnes, F Schlesinger, M Källberg, ...
Bioinformatics 32 (8), 1220-1222, 2016
Haplotype Estimation Using Sequencing Reads
O Delaneau, B Howie, AJ Cox, JF Zagury, J Marchini
The American Journal of Human Genetics 93 (4), 687-696, 2013
Toward the $1000 human genome
ST Bennett, C Barnes, A Cox, L Davies, C Brown
Pharmacogenomics 6 (4), 373-382, 2005
Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer
EP Murchison, OB Schulz-Trieglaff, Z Ning, LB Alexandrov, MJ Bauer, ...
Cell 148 (4), 780-791, 2012
Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints
S Niemann, CU Köser, S Gagneux, C Plinke, S Homolka, H Bignell, ...
PLoS One 4 (10), e7407, 2009
NxTrim: optimized trimming of Illumina mate pair reads
J O’Connell, O Schulz-Trieglaff, E Carlson, MM Hims, NA Gormley, ...
Bioinformatics 31 (12), 2035-2037, 2015
Large-scale compression of genomic sequence databases with the Burrows–Wheeler transform
AJ Cox, MJ Bauer, T Jakobi, G Rosone
Bioinformatics 28 (11), 1415-1419, 2012
CNAseg—a novel framework for identification of copy number changes in cancer from second-generation sequencing data
S Ivakhno, T Royce, AJ Cox, DJ Evers, RK Cheetham, S Tavaré
Bioinformatics 26 (24), 3051-3058, 2010
Lightweight algorithms for constructing and inverting the BWT of string collections
MJ Bauer, AJ Cox, G Rosone
Theoretical Computer Science 483, 134-148, 2013
Stability of Householder QR factorization for weighted least squares problems
AJ Cox, NJ Higham
Numerical Analysis, 57-73, 1997
Data processing system and methods
F Garcia, K Maisinger, S Tanner, J Moon, T Mann, ML Parkinson, AJ Cox, ...
US Patent 8,965,076, 2015
Lightweight BWT construction for very large string collections
MJ Bauer, AJ Cox, G Rosone
Annual Symposium on Combinatorial Pattern Matching, 219-231, 2011
Accuracy and stability of the null space method for solving the equality constrained least squares problem
AJ Cox, NJ Higham
BIT Numerical Mathematics 39 (1), 34-50, 1999
BEETL-fastq: a searchable compressed archive for DNA reads
L Janin, O Schulz-Trieglaff, AJ Cox
Bioinformatics 30 (19), 2796-2801, 2014
Adaptive reference-free compression of sequence quality scores
L Janin, G Rosone, AJ Cox
Bioinformatics 30 (1), 24-30, 2014
Lightweight LCP construction for next-generation sequencing datasets
MJ Bauer, AJ Cox, G Rosone, M Sciortino
International Workshop on Algorithms in Bioinformatics, 326-337, 2012
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