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Michel A. Cuendet
Michel A. Cuendet
Department of Physiology and Biophysics, Weill Cornell Medical College
Verified email at sib.swiss - Homepage
Title
Cited by
Cited by
Year
SwissParam: a fast force field generation tool for small organic molecules
V Zoete, MA Cuendet, A Grosdidier, O Michielin
Journal of computational chemistry 32 (11), 2359-2368, 2011
12952011
Implementation of the CHARMM force field in GROMACS: analysis of protein stability effects from correction maps, virtual interaction sites, and water models
P Bjelkmar, P Larsson, MA Cuendet, B Hess, E Lindahl
Journal of chemical theory and computation 6 (2), 459-466, 2010
7872010
Transport domain unlocking sets the uptake rate of an aspartate transporter
N Akyuz, ER Georgieva, Z Zhou, S Stolzenberg, MA Cuendet, ...
Nature 518 (7537), 68-73, 2015
1542015
Protein-protein interaction investigated by steered molecular dynamics: the TCR-pMHC complex
MA Cuendet, O Michielin
Biophysical journal 95 (8), 3575-3590, 2008
1142008
On the calculation of velocity-dependent properties in molecular dynamics simulations using the leapfrog integration algorithm
MA Cuendet, WF van Gunsteren
The Journal of chemical physics 127 (18), 184102, 2007
1122007
Heating and flooding: A unified approach for rapid generation of free energy surfaces
M Chen, MA Cuendet, ME Tuckerman
The Journal of Chemical Physics 137 (2), 024102, 2012
752012
Allosteric mechanisms of molecular machines at the membrane: transport by sodium-coupled symporters
MV LeVine, MA Cuendet, G Khelashvili, H Weinstein
Chemical reviews 116 (11), 6552-6587, 2016
672016
Structure-based, rational design of T cell receptors
V Zoete, M Irving, M Ferber, MA Cuendet, O Michielin
Frontiers in Immunology 4 (268), 2013
642013
Free energy reconstruction from metadynamics or adiabatic free energy dynamics simulations
MA Cuendet, ME Tuckerman
Journal of chemical theory and computation 10 (8), 2975-2986, 2014
622014
Statistical mechanical derivation of Jarzynski’s identity for thermostated non-Hamiltonian dynamics
MA Cuendet
Physical review letters 96 (12), 120602, 2006
482006
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
432016
How T cell receptors interact with peptide‐MHCs: A multiple steered molecular dynamics study
MA Cuendet, V Zoete, O Michielin
Proteins: Structure, Function, and Bioinformatics 79 (11), 3007-3024, 2011
432011
The Jarzynski identity derived from general Hamiltonian or non-Hamiltonian dynamics reproducing or ensembles
MA Cuendet
The Journal of chemical physics 125 (14), 144109, 2006
432006
Substrate-modulated unwinding of transmembrane helices in the NSS transporter LeuT
PS Merkle, K Gotfryd, MA Cuendet, KZ Leth-Espensen, U Gether, ...
Science advances 4 (5), eaar6179, 2018
402018
Optical Spectra of Cu (II)− Azurin by Hybrid TDDFT-Molecular Dynamics Simulations
M Cascella, MA Cuendet, I Tavernelli, U Rothlisberger
The Journal of Physical Chemistry B 111 (34), 10248-10252, 2007
402007
Acquired resistance to anti-MAPK targeted therapy confers an immune-evasive tumor microenvironment and cross-resistance to immunotherapy in melanoma
L Haas, A Elewaut, CL Gerard, C Umkehrer, L Leiendecker, M Pedersen, ...
Nature Cancer 2 (7), 693-708, 2021
392021
Cholesterol promotes protein binding by affecting membrane electrostatics and solvation properties
M Doktorova, FA Heberle, RL Kingston, G Khelashvili, MA Cuendet, ...
Biophysical journal 113 (9), 2004-2015, 2017
312017
How accurately do current force fields predict experimental peptide conformations? An adiabatic free energy dynamics study
AT Tzanov, MA Cuendet, ME Tuckerman
The Journal of Physical Chemistry B 118 (24), 6539-6552, 2014
312014
Use of the FACTS solvation model for protein–ligand docking calculations. Application to EADock
V Zoete, A Grosdidier, M Cuendet, O Michielin
Journal of Molecular Recognition 23 (5), 457-461, 2010
312010
The allostery landscape: Quantifying thermodynamic couplings in biomolecular systems
MA Cuendet, H Weinstein, MV LeVine
Journal of chemical theory and computation 12 (12), 5758-5767, 2016
282016
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