Kiran Raosaheb Patil
Kiran Raosaheb Patil
Structural & Comp. Biol. Unit, EMBL; MRC Toxicology Unit, University of Cambridge
Verified email at embl.de - Homepage
Title
Cited by
Cited by
Year
Extensive impact of non-antibiotic drugs on human gut bacteria
L Maier, M Pruteanu, M Kuhn, G Zeller, A Telzerow, EE Anderson, ...
Nature 555 (7698), 623-628, 2018
5992018
Uncovering transcriptional regulation of metabolism by using metabolic network topology
KR Patil, J Nielsen
Proceedings of the national academy of sciences 102 (8), 2685-2689, 2005
5412005
Evolutionary programming as a platform for in silico metabolic engineering
KR Patil, I Rocha, J Förster, J Nielsen
BMC bioinformatics 6 (1), 308, 2005
4682005
OptFlux: an open-source software platform for in silico metabolic engineering
I Rocha, P Maia, P Evangelista, P Vilaça, S Soares, JP Pinto, J Nielsen, ...
BMC systems biology 4 (1), 1-12, 2010
3752010
Metabolic dependencies drive species co-occurrence in diverse microbial communities
A Zelezniak, S Andrejev, O Ponomarova, DR Mende, P Bork, KR Patil
Proceedings of the National Academy of Sciences 112 (20), 6449-6454, 2015
3272015
Towards standards for human fecal sample processing in metagenomic studies
PI Costea, G Zeller, S Sunagawa, E Pelletier, A Alberti, F Levenez, ...
Nature biotechnology 35 (11), 1069-1076, 2017
2642017
The metabolic response of heterotrophic Arabidopsis cells to oxidative stress
CJ Baxter, H Redestig, N Schauer, D Repsilber, KR Patil, J Nielsen, ...
Plant physiology 143 (1), 312-325, 2007
2582007
Improved vanillin production in baker's yeast through in silico design
AR Brochado, C Matos, BL Mřller, J Hansen, UH Mortensen, KR Patil
Microbial cell factories 9 (1), 84, 2010
2222010
Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering
MA Asadollahi, J Maury, KR Patil, M Schalk, A Clark, J Nielsen
Metabolic engineering 11 (6), 328-334, 2009
2212009
Use of genome-scale microbial models for metabolic engineering
KR Patil, M Ĺkesson, J Nielsen
Current opinion in biotechnology 15 (1), 64-69, 2004
1792004
Integration of metabolome data with metabolic networks reveals reporter reactions
T Cakir, KR Patil, ZI Önsan, KÖ Ülgen, B Kirdar, J Nielsen
Molecular systems biology 2 (1), 50, 2006
1502006
Industrial systems biology of Saccharomyces cerevisiae enables novel succinic acid cell factory
JM Otero, D Cimini, KR Patil, SG Poulsen, L Olsson, J Nielsen
PloS one 8 (1), e54144, 2013
1452013
Metabolic interactions in microbial communities: untangling the Gordian knot
O Ponomarova, KR Patil
Current opinion in microbiology 27, 37-44, 2015
1352015
Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium
A Montagud, E Navarro, PF de Córdoba, JF Urchueguía, KR Patil
BMC systems biology 4 (1), 156, 2010
1342010
Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks
AP Oliveira, KR Patil, J Nielsen
BMC systems biology 2 (1), 1-16, 2008
1342008
BioMet Toolbox: genome-wide analysis of metabolism
M Cvijovic, R Olivares-Hernďż ˝ndez, R Agren, N Dahr, W Vongsangnak, ...
Nucleic acids research 38 (suppl_2), W144-W149, 2010
1232010
Natural computation meta-heuristics for the in silico optimization of microbial strains
M Rocha, P Maia, R Mendes, JP Pinto, EC Ferreira, J Nielsen, KR Patil, ...
BMC bioinformatics 9 (1), 1-16, 2008
1122008
Metabolic network topology reveals transcriptional regulatory signatures of type 2 diabetes
A Zelezniak, TH Pers, S Soares, ME Patti, KR Patil
PLoS Comput Biol 6 (4), e1000729, 2010
902010
Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
D Machado, S Andrejev, M Tramontano, KR Patil
Nucleic acids research 46 (15), 7542-7553, 2018
882018
Yeast creates a niche for symbiotic lactic acid bacteria through nitrogen overflow
O Ponomarova, N Gabrielli, DC Sévin, M Mülleder, K Zirngibl, K Bulyha, ...
Cell systems 5 (4), 345-357. e6, 2017
842017
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Articles 1–20