| The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements. L Shi, LH Reid, WD Jones, R Shippy, JA Warrington, SC Baker, PJ Collins, ... Nature biotechnology 24 (9), 1151-1161, 2006 | 2411 | 2006 |
| The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models Nature biotechnology 28 (8), 827-838, 2010 | 849 | 2010 |
| A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium Nature biotechnology 32 (9), 903-914, 2014 | 842 | 2014 |
| A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages Y Yu, JC Fuscoe, C Zhao, C Guo, M Jia, T Qing, DI Bannon, L Lancashire, ... Nature communications 5 (1), 1-11, 2014 | 360 | 2014 |
| DNMT3b overexpression contributes to a hypermethylator phenotype in human breast cancer cell lines JD Roll, AG Rivenbark, WD Jones, WB Coleman Molecular cancer 7, 1-14, 2008 | 308 | 2008 |
| The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies L Shi, WD Jones, RV Jensen, SC Harris, RG Perkins, FM Goodsaid, ... BMC bioinformatics 9, 1-19, 2008 | 262 | 2008 |
| Using RNA sample titrations to assess microarray platform performance and normalization techniques R Shippy, S Fulmer-Smentek, RV Jensen, WD Jones, PK Wolber, ... Nature biotechnology 24 (9), 1123-1131, 2006 | 208 | 2006 |
| Tumor mutational burden is a determinant of immune-mediated survival in breast cancer A Thomas, ED Routh, A Pullikuth, G Jin, J Su, JW Chou, KA Hoadley, ... Oncoimmunology 7 (10), e1490854, 2018 | 197 | 2018 |
| Reporting guidelines for human microbiome research: the STORMS checklist C Mirzayi, A Renson, Genomic Standards Consortium, ... Nature medicine 27 (11), 1885-1892, 2021 | 195 | 2021 |
| Method and system for dynamic risk assessment of software systems WD Jones, SJ Aud, JP Hudepohl, ML Flournory, WB Snipes, EC Schutz US Patent 6,219,805, 2001 | 162 | 2001 |
| Classification tree models of software quality over multiple releases TM Khoshgoftaar, EB Allen, WD Jones, JI Hudepohl Proceedings 10th International Symposium on Software Reliability Engineering …, 1999 | 159 | 1999 |
| Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology IW Deveson, B Gong, K Lai, JS LoCoco, TA Richmond, J Schageman, ... Nature biotechnology 39 (9), 1115-1128, 2021 | 148 | 2021 |
| k-Nearest neighbor models for microarray gene expression analysis and clinical outcome prediction RM Parry, W Jones, TH Stokes, JH Phan, RA Moffitt, H Fang, L Shi, ... The pharmacogenomics journal 10 (4), 292-309, 2010 | 132 | 2010 |
| Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples C April, B Klotzle, T Royce, E Wickham-Garcia, T Boyaniwsky, J Izzo, ... PloS one 4 (12), e8162, 2009 | 130 | 2009 |
| Microarray-based gene expression profiling for molecular classification of breast cancer and identification of new targets for therapy R Sandhu, JS Parker, WD Jones, CA Livasy, WB Coleman Laboratory Medicine 41 (6), 364-372, 2010 | 93 | 2010 |
| Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing W Xiao, L Ren, Z Chen, LT Fang, Y Zhao, J Lack, M Guan, B Zhu, ... Nature biotechnology 39 (9), 1141-1150, 2021 | 77 | 2021 |
| Dysregulation of the epigenome in triple-negative breast cancers: basal-like and claudin-low breast cancers express aberrant DNA hypermethylation JD Roll, AG Rivenbark, R Sandhu, JS Parker, WD Jones, LA Carey, ... Experimental and molecular pathology 95 (3), 276-287, 2013 | 76 | 2013 |
| Data mining for predictors of software quality TM Khoshgoftaar, EB Allen, WD Jones, JP Hudepohl International Journal of Software Engineering and Knowledge Engineering 9 …, 1999 | 76 | 1999 |
| Technical reproducibility of genotyping SNP arrays used in genome-wide association studies H Hong, L Xu, J Liu, WD Jones, Z Su, B Ning, R Perkins, W Ge, K Miclaus, ... Public Library of Science 7 (9), e44483, 2012 | 71 | 2012 |
| DNA methylation-dependent epigenetic regulation of gene expression in MCF-7 breast cancer cells AG Rivenbark, WD Jones, JD Risher, WB Coleman Epigenetics 1 (1), 33-45, 2006 | 60 | 2006 |
