| Gut metagenome in European women with normal, impaired and diabetic glucose control FH Karlsson, V Tremaroli, I Nookaew, G Bergström, CJ Behre, ... Nature 498 (7452), 99, 2013 | 1807 | 2013 |
| A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013 | 954 | 2013 |
| Symptomatic atherosclerosis is associated with an altered gut metagenome FH Karlsson, F Fåk, I Nookaew, V Tremaroli, B Fagerberg, D Petranovic, ... Nature communications 3 (1), 1-8, 2012 | 706 | 2012 |
| Insights from 20 years of bacterial genome sequencing M Land, L Hauser, SR Jun, I Nookaew, MR Leuze, TH Ahn, T Karpinets, ... Functional & integrative genomics 15 (2), 141-161, 2015 | 508 | 2015 |
| Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods L Väremo, J Nielsen, I Nookaew Nucleic acids research 41 (8), 4378-4391, 2013 | 424 | 2013 |
| Voluntary running suppresses tumor growth through epinephrine-and IL-6-dependent NK cell mobilization and redistribution L Pedersen, M Idorn, GH Olofsson, B Lauenborg, I Nookaew, RH Hansen, ... Cell metabolism 23 (3), 554-562, 2016 | 364 | 2016 |
| The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum R Agren, L Liu, S Shoaie, W Vongsangnak, I Nookaew, J Nielsen PLoS Comput Biol 9 (3), e1002980, 2013 | 344 | 2013 |
| Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT R Agren, S Bordel, A Mardinoglu, N Pornputtapong, I Nookaew, J Nielsen PLoS Comput Biol 8 (5), e1002518, 2012 | 340 | 2012 |
| A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in … I Nookaew, M Papini, N Pornputtapong, G Scalcinati, L Fagerberg, ... Nucleic acids research 40 (20), 10084-10097, 2012 | 334 | 2012 |
| Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88 E Larsson, V Tremaroli, YS Lee, O Koren, I Nookaew, A Fricker, J Nielsen, ... gut 61 (8), 1124-1131, 2012 | 302 | 2012 |
| Understanding the interactions between bacteria in the human gut through metabolic modeling S Shoaie, F Karlsson, A Mardinoglu, I Nookaew, S Bordel, J Nielsen Scientific reports 3, 2532, 2013 | 203 | 2013 |
| Integration of clinical data with a genome‐scale metabolic model of the human adipocyte A Mardinoglu, R Agren, C Kampf, A Asplund, I Nookaew, P Jacobson, ... Molecular systems biology 9 (1), 649, 2013 | 185 | 2013 |
| The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism I Nookaew, MC Jewett, A Meechai, C Thammarongtham, K Laoteng, ... BMC systems biology 2 (1), 71, 2008 | 175 | 2008 |
| Fifteen years of large scale metabolic modeling of yeast: developments and impacts T Österlund, I Nookaew, J Nielsen Biotechnology advances 30 (5), 979-988, 2012 | 130 | 2012 |
| BioMet Toolbox: genome-wide analysis of metabolism M Cvijovic, R Olivares-Hernï¿ ½ndez, R Agren, N Dahr, W Vongsangnak, ... Nucleic acids research 38 (suppl_2), W144-W149, 2010 | 126 | 2010 |
| Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials L Caspeta, S Shoaie, R Agren, I Nookaew, J Nielsen BMC systems biology 6 (1), 24, 2012 | 120 | 2012 |
| Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma F Gatto, I Nookaew, J Nielsen Proceedings of the National Academy of Sciences 111 (9), E866-E875, 2014 | 111 | 2014 |
| Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling T Österlund, I Nookaew, S Bordel, J Nielsen BMC systems biology 7 (1), 36, 2013 | 111 | 2013 |
| A Closer Look at Bacteroides: Phylogenetic Relationship and Genomic Implications of a Life in the Human Gut FH Karlsson, DW Ussery, J Nielsen, I Nookaew Microbial ecology 61 (3), 473-485, 2011 | 97 | 2011 |
| Site-specific programming of the host epithelial transcriptome by the gut microbiota F Sommer, I Nookaew, N Sommer, P Fogelstrand, F Bäckhed Genome biology 16 (1), 62, 2015 | 91 | 2015 |
Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenVerified email at chalmers.se
