| BEDOPS: high-performance genomic feature operations S Neph, MS Kuehn, AP Reynolds, E Haugen, RE Thurman, AK Johnson, ... Bioinformatics 28 (14), 1919-1920, 2012 | 882 | 2012 |
| Sequencing newly replicated DNA reveals widespread plasticity in human replication timing RS Hansen, S Thomas, R Sandstrom, TK Canfield, RE Thurman, ... Proceedings of the National Academy of Sciences 107 (1), 139-144, 2010 | 608 | 2010 |
| A temporal chromatin signature in human embryonic stem cells identifies regulators of cardiac development SL Paige, S Thomas, CL Stoick-Cooper, H Wang, L Maves, R Sandstrom, ... Cell 151 (1), 221-232, 2012 | 359 | 2012 |
| The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding XY Li, S Thomas, PJ Sabo, MB Eisen, JA Stamatoyannopoulos, ... Genome biology 12, 1-17, 2011 | 247 | 2011 |
| Transcription in kinetoplastid protozoa: why be normal? DA Campbell, S Thomas, NR Sturm Microbes and infection 5 (13), 1231-1240, 2003 | 237 | 2003 |
| BET bromodomain inhibition suppresses innate inflammatory and profibrotic transcriptional networks in heart failure Q Duan, S McMahon, P Anand, H Shah, S Thomas, HT Salunga, Y Huang, ... Science translational medicine 9 (390), eaah5084, 2017 | 223 | 2017 |
| Complex interdependence regulates heterotypic transcription factor distribution and coordinates cardiogenesis L Luna-Zurita, CU Stirnimann, S Glatt, BL Kaynak, S Thomas, F Baudin, ... Cell 164 (5), 999-1014, 2016 | 220 | 2016 |
| Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development T Kaplan, XY Li, PJ Sabo, S Thomas, JA Stamatoyannopoulos, MD Biggin, ... PLoS genetics 7 (2), e1001290, 2011 | 207 | 2011 |
| Dynamic reprogramming of chromatin accessibility during Drosophilaembryo development S Thomas, XY Li, PJ Sabo, R Sandstrom, RE Thurman, TK Canfield, ... Genome biology 12, 1-17, 2011 | 205 | 2011 |
| Histone acetylations mark origins of polycistronic transcription in Leishmania major S Thomas, A Green, NR Sturm, DA Campbell, PJ Myler BMC genomics 10, 1-15, 2009 | 173 | 2009 |
| DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila WW Fisher, JJ Li, AS Hammonds, JB Brown, BD Pfeiffer, R Weiszmann, ... Proceedings of the National Academy of Sciences 109 (52), 21330-21335, 2012 | 159 | 2012 |
| Features that define the best ChIP-seq peak calling algorithms R Thomas, S Thomas, AK Holloway, KS Pollard Briefings in bioinformatics 18 (3), 441-450, 2017 | 142 | 2017 |
| Transcriptional profiling and therapeutic targeting of oxidative stress in neuroinflammation AS Mendiola, JK Ryu, S Bardehle, A Meyer-Franke, KKH Ang, C Wilson, ... Nature immunology 21 (5), 513-524, 2020 | 140 | 2020 |
| RNA‐seq data: challenges in and recommendations for experimental design and analysis AG Williams, S Thomas, SK Wyman, AK Holloway Current protocols in human genetics 83 (1), 11.13. 1-11.13. 20, 2014 | 137 | 2014 |
| Acetylation of RNA polymerase II regulates growth-factor-induced gene transcription in mammalian cells S Schröder, E Herker, F Itzen, D He, S Thomas, DA Gilchrist, K Kaehlcke, ... Molecular cell 52 (3), 314-324, 2013 | 135 | 2013 |
| Somatostatin receptor 2a is a more sensitive diagnostic marker of meningioma than epithelial membrane antigen JR Menke, DR Raleigh, AM Gown, S Thomas, A Perry, T Tihan Acta neuropathologica 130, 441-443, 2015 | 131 | 2015 |
| The short isoform of BRD4 promotes HIV-1 latency by engaging repressive SWI/SNF chromatin-remodeling complexes RJ Conrad, P Fozouni, S Thomas, H Sy, Q Zhang, MM Zhou, M Ott Molecular cell 67 (6), 1001-1012. e6, 2017 | 120 | 2017 |
| Brg1 modulates enhancer activation in mesoderm lineage commitment JM Alexander, SK Hota, D He, S Thomas, L Ho, LA Pennacchio, ... Development 142 (8), 1418-1430, 2015 | 114 | 2015 |
| SOX2 O-GlcNAcylation alters its protein-protein interactions and genomic occupancy to modulate gene expression in pluripotent cells SA Myers, S Peddada, N Chatterjee, T Friedrich, K Tomoda, G Krings, ... elife 5, e10647, 2016 | 71 | 2016 |
| Long-read sequencing of chicken transcripts and identification of new transcript isoforms S Thomas, JG Underwood, E Tseng, AK Holloway, ... PloS one 9 (4), e94650, 2014 | 66 | 2014 |
