Meena Choi
Meena Choi
Northeastern University
Verified email at
Cited by
Cited by
MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments
M Choi, CY Chang, T Clough, D Broudy, T Killeen, B MacLean, O Vitek
Bioinformatics 30 (17), 2524-2526, 2014
Prediction of colorectal cancer diagnosis based on circulating plasma proteins
S Surinova, M Choi, S Tao, PJ Schüffler, CY Chang, T Clough, K Vysloužil, ...
EMBO molecular medicine 7 (9), 1166-1178, 2015
Identification of a seven glycopeptide signature for malignant pleural mesothelioma in human serum by selected reaction monitoring
F Cerciello, M Choi, A Nicastri, D Bausch-Fluck, A Ziegler, O Vitek, ...
Clinical proteomics 10 (1), 1-12, 2013
Non‐invasive prognostic protein biomarker signatures associated with colorectal cancer
S Surinova, L Radová, M Choi, J Srovnal, H Brenner, O Vitek, M Hajdúch, ...
EMBO molecular medicine 7 (9), 1153-1165, 2015
A framework for installable external tools in Skyline
D Broudy, T Killeen, M Choi, N Shulman, DR Mani, SE Abbatiello, D Mani, ...
Bioinformatics 30 (17), 2521-2523, 2014
New guidelines for publication of manuscripts describing development and application of targeted mass spectrometry measurements of peptides and proteins
S Abbatiello, BL Ackermann, C Borchers, RA Bradshaw, SA Carr, ...
Molecular & Cellular Proteomics 16 (3), 327-328, 2017
study: detection of differentially abundant proteins in label-free quantitative LC-MS/MS experiments
M Choi, ZF Eren-Dogu, C Colangelo, J Cottrell, MR Hoopmann, EA Kapp, ...
J Proteome Res 16 (2), 945-957, 2017
Precise temporal profiling of signaling complexes in primary cells using SWATH mass spectrometry
E Caron, R Roncagalli, T Hase, WE Wolski, M Choi, MG Menoita, ...
Cell reports 18 (13), 3219-3226, 2017
Protein-based classifier to predict conversion from clinically isolated syndrome to multiple sclerosis
E Borràs, E Cantó, M Choi, LM Villar, JC Álvarez-Cermeño, C Chiva, ...
Molecular & Cellular Proteomics 15 (1), 318-328, 2016
ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC–MS/MS Experiments
M Choi, ZF Eren-Dogu, C Colangelo, J Cottrell, MR Hoopmann, EA Kapp, ...
Journal of proteome research 16 (2), 945-957, 2017
A targeted mass spectrometry strategy for developing proteomic biomarkers: a case study of epithelial ovarian cancer
R Hüttenhain, M Choi, LM de la Fuente, K Oehl, CY Chang, ...
Molecular & Cellular Proteomics 18 (9), 1836-1850, 2019
System-wide quantitative proteomics of the metabolic syndrome in mice: genotypic and dietary effects
C Terfve, E Sabidó, Y Wu, E Gonçalves, M Choi, S Vaga, O Vitek, ...
Journal of Proteome Research 16 (2), 831-841, 2017
MSstats: Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
M Choi, C Chang, O Vitek
R package version 2 (0), 2014
Selection of features with consistent profiles improves relative protein quantification in mass spectrometry experiments
TH Tsai, M Choi, B Banfai, Y Liu, BX MacLean, T Dunkley, O Vitek
Molecular & Cellular Proteomics 19 (6), 944-959, 2020
Verification of a Blood-Based Targeted Proteomics Signature for Malignant Pleural Mesothelioma
F Cerciello, M Choi, SL Sinicropi-Yao, K Lomeo, JM Amann, ...
Cancer Epidemiology and Prevention Biomarkers 29 (10), 1973-1982, 2020
MSstatsTMT: Statistical detection of differentially abundant proteins in experiments with isobaric labeling and multiple mixtures
T Huang, M Choi, M Tzouros, S Golling, NJ Pandya, B Banfai, T Dunkley, ...
Molecular & Cellular Proteomics 19 (10), 1706-1723, 2020
MassIVE. quant: a community resource of quantitative mass spectrometry–based proteomics datasets
M Choi, J Carver, C Chiva, M Tzouros, T Huang, TH Tsai, B Pullman, ...
Nature Methods, 1-4, 2020
Protein significance analysis of mass spectrometry-based proteomics experiments with R and MSstats (v3. 18.1) or later
M Choi, TH Tsai
214O Multiplexed proteomics biomarkers for malignant pleural mesothelioma detection in blood
F Cerciello, M Choi, SL Sinicropi-Yao, E Felley-Bosco, RA Stahel, ...
Journal of Thoracic Oncology 13 (4), S129, 2018
P1. 09-001 Multiplexed Biomarker Strategies Based on Targeted Proteomics for Detection of Malignant Pleural Mesothelioma in Blood
F Cerciello, M Choi, K Lome, J Amann, E Felley-Bosco, R Stahel, ...
Journal of Thoracic Oncology 12 (11), S2017-S2018, 2017
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