| MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments M Choi, CY Chang, T Clough, D Broudy, T Killeen, B MacLean, O Vitek Bioinformatics 30 (17), 2524-2526, 2014 | 893 | 2014 |
| MSstatsTMT: statistical detection of differentially abundant proteins in experiments with isobaric labeling and multiple mixtures T Huang, M Choi, M Tzouros, S Golling, NJ Pandya, B Banfai, T Dunkley, ... Molecular & Cellular Proteomics 19 (10), 1706-1723, 2020 | 102 | 2020 |
| Prediction of colorectal cancer diagnosis based on circulating plasma proteins S Surinova, M Choi, S Tao, PJ Schüffler, CY Chang, T Clough, K Vysloužil, ... EMBO molecular medicine 7 (9), 1166-1178, 2015 | 101 | 2015 |
| Antibody targeting of E3 ubiquitin ligases for receptor degradation H Marei, WTK Tsai, YS Kee, K Ruiz, J He, C Cox, T Sun, S Penikalapati, ... Nature 610 (7930), 182-189, 2022 | 71 | 2022 |
| MassIVE. quant: a community resource of quantitative mass spectrometry–based proteomics datasets M Choi, J Carver, C Chiva, M Tzouros, T Huang, TH Tsai, B Pullman, ... Nature methods 17 (10), 981-984, 2020 | 65 | 2020 |
| Non‐invasive prognostic protein biomarker signatures associated with colorectal cancer S Surinova, L Radová, M Choi, J Srovnal, H Brenner, O Vitek, M Hajdúch, ... EMBO molecular medicine 7 (9), 1153-1165, 2015 | 57 | 2015 |
| A proteomics sample metadata representation for multiomics integration and big data analysis C Dai, A Füllgrabe, J Pfeuffer, EM Solovyeva, J Deng, P Moreno, ... Nature Communications 12 (1), 5854, 2021 | 53 | 2021 |
| A targeted mass spectrometry strategy for developing proteomic biomarkers: A case study of epithelial ovarian cancer*[S] R Hüttenhain, M Choi, LM de la Fuente, K Oehl, CY Chang, ... Molecular & Cellular Proteomics 18 (9), 1836-1850, 2019 | 50 | 2019 |
| Identification of a seven glycopeptide signature for malignant pleural mesothelioma in human serum by selected reaction monitoring F Cerciello, M Choi, A Nicastri, D Bausch-Fluck, A Ziegler, O Vitek, ... Clinical proteomics 10, 1-12, 2013 | 50 | 2013 |
| New guidelines for publication of manuscripts describing development and application of targeted mass spectrometry measurements of peptides and proteins S Abbatiello, BL Ackermann, C Borchers, RA Bradshaw, SA Carr, ... Molecular & Cellular Proteomics 16 (3), 327-328, 2017 | 46 | 2017 |
| study: detection of differentially abundant proteins in label-free quantitative LC-MS/MS experiments M Choi, ZF Eren-Dogu, C Colangelo, J Cottrell, MR Hoopmann, EA Kapp, ... J Proteome Res 16 (2), 945-957, 2017 | 46 | 2017 |
| A framework for installable external tools in Skyline D Broudy, T Killeen, M Choi, N Shulman, DR Mani, SE Abbatiello, D Mani, ... Bioinformatics 30 (17), 2521-2523, 2014 | 37 | 2014 |
| Protein-based classifier to predict conversion from clinically isolated syndrome to multiple sclerosis E Borràs, E Cantó, M Choi, LM Villar, JC Álvarez-Cermeño, C Chiva, ... Molecular & Cellular Proteomics 15 (1), 318-328, 2016 | 35 | 2016 |
| ABRF Proteome Informatics Research Group (iPRG) 2015 Study: detection of differentially abundant proteins in label-free quantitative LC–MS/MS experiments M Choi, ZF Eren-Dogu, C Colangelo, J Cottrell, MR Hoopmann, EA Kapp, ... Journal of proteome research 16 (2), 945-957, 2017 | 34 | 2017 |
| Precise temporal profiling of signaling complexes in primary cells using SWATH mass spectrometry E Caron, R Roncagalli, T Hase, WE Wolski, M Choi, MG Menoita, ... Cell reports 18 (13), 3219-3226, 2017 | 30 | 2017 |
| Selection of features with consistent profiles improves relative protein quantification in mass spectrometry experiments TH Tsai, M Choi, B Banfai, Y Liu, BX MacLean, T Dunkley, O Vitek Molecular & Cellular Proteomics 19 (6), 944-959, 2020 | 26 | 2020 |
| MSstats Version 4.0: statistical analyses of quantitative mass spectrometry-based proteomic experiments with chromatography-based quantification at scale D Kohler, M Staniak, TH Tsai, T Huang, N Shulman, OM Bernhardt, ... Journal of Proteome Research 22 (5), 1466-1482, 2023 | 15 | 2023 |
| Multiplexed proteomics of autophagy-deficient murine macrophages reveals enhanced antimicrobial immunity via the oxidative stress response T Maculins, E Verschueren, T Hinkle, M Choi, P Chang, C Chalouni, ... Elife 10, e62320, 2021 | 11 | 2021 |
| MSstatsTMT: Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling T Huang, M Choi, S Hao, O Vitek R package Bioconductor, v1, 2020 | 11 | 2020 |
| Genetic inactivation of RIP1 kinase activity in rats protects against ischemic brain injury K Stark, T Goncharov, E Varfolomeev, L Xie, H Ngu, I Peng, KR Anderson, ... Cell Death & Disease 12 (4), 379, 2021 | 9 | 2021 |
