| LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets A Wilm, PPK Aw, D Bertrand, GHT Yeo, SH Ong, CH Wong, CC Khor, ... Nucleic Acids Research, 2012 | 592 | 2012 |
| Spread, Circulation, and Evolution of the Middle East Respiratory Syndrome Coronavirus M Cotten, SJ Watson, AI Zumla, HQ Makhdoom, AL Palser, SH Ong, ... mBio 5 (1), e01062-13, 2014 | 217 | 2014 |
| IVA: accurate de novo assembly of RNA virus genomes M Hunt, A Gall, SH Ong, J Brener, B Ferns, P Goulder, E Nastouli, ... Bioinformatics 31 (14), 2374-2376, 2015 | 123 | 2015 |
| Genomic epidemiology of a dengue virus epidemic in urban Singapore MJ Schreiber, EC Holmes, SH Ong, HSH Soh, W Liu, L Tanner, PPK Aw, ... Journal of Virology 83 (9), 4163-4173, 2009 | 100 | 2009 |
| Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences SH Ong, VU Kukkillaya, A Wilm, C Lay, EXP Ho, L Low, ML Hibberd, ... PLOS ONE 8 (4), e60811, 2013 | 92 | 2013 |
| A method for full genome sequencing of all four serotypes of the dengue virus JG Christenbury, PPK Aw, SH Ong, MJ Schreiber, A Chow, DJ Gubler, ... Journal of Virological Methods 169 (1), 202-206, 2010 | 73 | 2010 |
| Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting M Cotten, V Petrova, MVT Phan, MA Rabaa, SJ Watson, SH Ong, ... Journal of Virology 88 (19), 11056-11069, 2014 | 64 | 2014 |
| Periodic re-emergence of endemic strains with strong epidemic potential—A proposed explanation for the 2004 Indonesian dengue epidemic SH Ong, JT Yip, YL Chen, W Liu, S Harun, E Lystiyaningsih, B Heriyanto, ... Infection, Genetics and Evolution 8 (2), 191-204, 2008 | 60 | 2008 |
| Plasmablasts Generated during Repeated Dengue Infection Are Virus Glycoprotein–Specific and Bind to Multiple Virus Serotypes MH Xu, V Hadinoto, R Appanna, K Joensson, YX Toh, T Balakrishnan, ... The Journal of Immunology 189 (12), 5877-5885, 2012 | 59 | 2012 |
| Genome-wide CRISPR-KO Screen Uncovers mTORC1-Mediated Gsk3 Regulation in Naive Pluripotency Maintenance and Dissolution M Li, SL Jason, K Tilgner, SH Ong, H Koike-Yusa, K Yusa Cell Reports 24 (2), 489-502, 2018 | 40 | 2018 |
| Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe F Blanquart, C Wymant, M Cornelissen, A Gall, M Bakker, D Bezemer, ... PLoS biology 15 (6), e2001855, 2017 | 35 | 2017 |
| Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver C Wymant, F Blanquart, T Golubchik, A Gall, M Bakker, D Bezemer, ... Virus Evolution 4 (1), vey007, 2018 | 31 | 2018 |
| Systems consequences of amplicon formation in human breast cancer K Inaki, F Menghi, XY Woo, JP Wagner, PÉ Jacques, YF Lee, ... Genome Research 24 (10), 1559-1571, 2014 | 31 | 2014 |
| IDBD: infectious disease biomarker database IS Yang, C Ryu, KJ Cho, JK Kim, SH Ong, WP Mitchell, BS Kim, HB Oh, ... Nucleic Acids Research 36 (suppl 1), D455-D460, 2008 | 30 | 2008 |
| Outcompeting p53-mutant cells in the normal esophagus by redox manipulation D Fernandez-Antoran, G Piedrafita, K Murai, SH Ong, A Herms, C Frezza, ... Cell stem cell 25 (3), 329-341. e6, 2019 | 28 | 2019 |
| Epidermal tissue adapts to restrain progenitors carrying clonal p53 mutations K Murai, G Skrupskelyte, G Piedrafita, M Hall, V Kostiou, SH Ong, T Nagy, ... Cell stem cell 23 (5), 687-699. e8, 2018 | 28 | 2018 |
| Optimised metrics for CRISPR-KO screens with second-generation gRNA libraries SH Ong, Y Li, H Koike-Yusa, K Yusa Scientific Reports 7 (1), 7384, 2017 | 26 | 2017 |
| From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing M Cornelissen, A Gall, M Vink, F Zorgdrager, Š Binter, S Edwards, ... Virus research 239, 10-16, 2017 | 22 | 2017 |
| DengueInfo: A web portal to dengue information resources MJ Schreiber, SH Ong, RCG Holland, ML Hibberd, SG Vasudevan, ... Infection, Genetics and Evolution 7 (4), 540-541, 2007 | 17 | 2007 |
| Patient-Based Transcriptome-Wide Analysis Identify Interferon and Ubiquination Pathways as Potential Predictors of Influenza A Disease Severity LT Hoang, T Tolfvenstam, EE Ooi, CC Khor, ANM Naim, EXP Ho, SH Ong, ... PloS ONE 9 (11), e111640, 2014 | 15 | 2014 |
Niranjan NagarajanSenior Group Leader, Genome Institute of SingaporeVerified email at gis.a-star.edu.sg
