Swee Hoe Ong
Swee Hoe Ong
Wellcome Sanger Institute
Verified email at sanger.ac.uk - Homepage
Cited by
Cited by
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
A Wilm, PPK Aw, D Bertrand, GHT Yeo, SH Ong, CH Wong, CC Khor, ...
Nucleic Acids Research, 2012
Spread, Circulation, and Evolution of the Middle East Respiratory Syndrome Coronavirus
M Cotten, SJ Watson, AI Zumla, HQ Makhdoom, AL Palser, SH Ong, ...
mBio 5 (1), e01062-13, 2014
IVA: accurate de novo assembly of RNA virus genomes
M Hunt, A Gall, SH Ong, J Brener, B Ferns, P Goulder, E Nastouli, ...
Bioinformatics 31 (14), 2374-2376, 2015
Genomic epidemiology of a dengue virus epidemic in urban Singapore
MJ Schreiber, EC Holmes, SH Ong, HSH Soh, W Liu, L Tanner, PPK Aw, ...
Journal of Virology 83 (9), 4163-4173, 2009
Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences
SH Ong, VU Kukkillaya, A Wilm, C Lay, EXP Ho, L Low, ML Hibberd, ...
PLOS ONE 8 (4), e60811, 2013
A method for full genome sequencing of all four serotypes of the dengue virus
JG Christenbury, PPK Aw, SH Ong, MJ Schreiber, A Chow, DJ Gubler, ...
Journal of Virological Methods 169 (1), 202-206, 2010
Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting
M Cotten, V Petrova, MVT Phan, MA Rabaa, SJ Watson, SH Ong, ...
Journal of Virology 88 (19), 11056-11069, 2014
Periodic re-emergence of endemic strains with strong epidemic potential—A proposed explanation for the 2004 Indonesian dengue epidemic
SH Ong, JT Yip, YL Chen, W Liu, S Harun, E Lystiyaningsih, B Heriyanto, ...
Infection, Genetics and Evolution 8 (2), 191-204, 2008
Plasmablasts Generated during Repeated Dengue Infection Are Virus Glycoprotein–Specific and Bind to Multiple Virus Serotypes
MH Xu, V Hadinoto, R Appanna, K Joensson, YX Toh, T Balakrishnan, ...
The Journal of Immunology 189 (12), 5877-5885, 2012
Genome-wide CRISPR-KO Screen Uncovers mTORC1-Mediated Gsk3 Regulation in Naive Pluripotency Maintenance and Dissolution
M Li, SL Jason, K Tilgner, SH Ong, H Koike-Yusa, K Yusa
Cell Reports 24 (2), 489-502, 2018
Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe
F Blanquart, C Wymant, M Cornelissen, A Gall, M Bakker, D Bezemer, ...
PLoS biology 15 (6), e2001855, 2017
Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver
C Wymant, F Blanquart, T Golubchik, A Gall, M Bakker, D Bezemer, ...
Virus Evolution 4 (1), vey007, 2018
Systems consequences of amplicon formation in human breast cancer
K Inaki, F Menghi, XY Woo, JP Wagner, PÉ Jacques, YF Lee, ...
Genome Research 24 (10), 1559-1571, 2014
IDBD: infectious disease biomarker database
IS Yang, C Ryu, KJ Cho, JK Kim, SH Ong, WP Mitchell, BS Kim, HB Oh, ...
Nucleic Acids Research 36 (suppl 1), D455-D460, 2008
Outcompeting p53-mutant cells in the normal esophagus by redox manipulation
D Fernandez-Antoran, G Piedrafita, K Murai, SH Ong, A Herms, C Frezza, ...
Cell stem cell 25 (3), 329-341. e6, 2019
Epidermal tissue adapts to restrain progenitors carrying clonal p53 mutations
K Murai, G Skrupskelyte, G Piedrafita, M Hall, V Kostiou, SH Ong, T Nagy, ...
Cell stem cell 23 (5), 687-699. e8, 2018
Optimised metrics for CRISPR-KO screens with second-generation gRNA libraries
SH Ong, Y Li, H Koike-Yusa, K Yusa
Scientific Reports 7 (1), 7384, 2017
From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing
M Cornelissen, A Gall, M Vink, F Zorgdrager, Š Binter, S Edwards, ...
Virus research 239, 10-16, 2017
DengueInfo: A web portal to dengue information resources
MJ Schreiber, SH Ong, RCG Holland, ML Hibberd, SG Vasudevan, ...
Infection, Genetics and Evolution 7 (4), 540-541, 2007
Patient-Based Transcriptome-Wide Analysis Identify Interferon and Ubiquination Pathways as Potential Predictors of Influenza A Disease Severity
LT Hoang, T Tolfvenstam, EE Ooi, CC Khor, ANM Naim, EXP Ho, SH Ong, ...
PloS ONE 9 (11), e111640, 2014
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