Sergei L Kosakovsky Pond
Sergei L Kosakovsky Pond
Professor of Biology, Institute for Genomics and Evolutionary Medicine, Temple University
Verifierad e-postadress på temple.edu - Startsida
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HyPhy: hypothesis testing using phylogenies
SLK Pond, SV Muse
Statistical methods in molecular evolution, 125-181, 2005
28752005
Not so different after all: a comparison of methods for detecting amino acid sites under selection
SL Kosakovsky Pond, SDW Frost
Molecular biology and evolution 22 (5), 1208-1222, 2005
17042005
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
SLK Pond, SDW Frost
Bioinformatics 21 (10), 2531-2533, 2005
13112005
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
W Delport, AFY Poon, SDW Frost, SL Kosakovsky Pond
Bioinformatics 26 (19), 2455-2457, 2010
11322010
Detecting individual sites subject to episodic diversifying selection
B Murrell, JO Wertheim, S Moola, T Weighill, K Scheffler, SLK Pond
PLoS genet 8 (7), e1002764, 2012
9832012
Automated phylogenetic detection of recombination using a genetic algorithm
SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost
Molecular biology and evolution 23 (10), 1891-1901, 2006
8222006
FUBAR: a fast, unconstrained bayesian approximation for inferring selection
B Murrell, S Moola, A Mabona, T Weighill, D Sheward, ...
Molecular biology and evolution 30 (5), 1196-1205, 2013
6942013
GARD: a genetic algorithm for recombination detection
SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost
Bioinformatics 22 (24), 3096-3098, 2006
6662006
Persistent HIV-1 replication maintains the tissue reservoir during therapy
R Lorenzo-Redondo, HR Fryer, T Bedford, EY Kim, J Archer, SLK Pond, ...
Nature 530 (7588), 51-56, 2016
5032016
Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage
RA Farrer, LA Weinert, J Bielby, TWJ Garner, F Balloux, F Clare, J Bosch, ...
Proceedings of the National Academy of Sciences 108 (46), 18732-18736, 2011
4152011
A random effects branch-site model for detecting episodic diversifying selection
SL Kosakovsky Pond, B Murrell, M Fourment, SDW Frost, W Delport, ...
Molecular biology and evolution 28 (11), 3033-3043, 2011
4042011
Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection
SDW Frost, T Wrin, DM Smith, SLK Pond, Y Liu, E Paxinos, C Chappey, ...
Proceedings of the National Academy of Sciences 102 (51), 18514-18519, 2005
3712005
Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
medRxiv, 2020
3502020
28-way vertebrate alignment and conservation track in the UCSC Genome Browser
W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ...
Genome research 17 (12), 1797-1808, 2007
2912007
Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection
MD Smith, JO Wertheim, S Weaver, B Murrell, K Scheffler, ...
Molecular biology and evolution 32 (5), 1342-1353, 2015
2812015
Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes
S Weaver, SD Shank, SJ Spielman, M Li, SV Muse, SL Kosakovsky Pond
Molecular biology and evolution 35 (3), 773-777, 2018
2632018
Site-to-site variation of synonymous substitution rates
SK Pond, SV Muse
Molecular biology and evolution 22 (12), 2375-2385, 2005
2622005
RELAX: detecting relaxed selection in a phylogenetic framework
JO Wertheim, B Murrell, MD Smith, SL Kosakovsky Pond, K Scheffler
Molecular biology and evolution 32 (3), 820-832, 2015
2512015
Adaptation to different human populations by HIV-1 revealed by codon-based analyses
SLK Pond, SDW Frost, Z Grossman, MB Gravenor, DD Richman, ...
PLoS Comput Biol 2 (6), e62, 2006
2472006
Persistence of transmitted drug resistance among subjects with primary human immunodeficiency virus infection
SJ Little, SDW Frost, JK Wong, DM Smith, SLK Pond, CC Ignacio, ...
Journal of virology 82 (11), 5510-5518, 2008
2432008
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Artiklar 1–20