Andrew C Adey
Andrew C Adey
Associate Professor of Molecular & Medical Genetics, Oregon Health & Science University
Verifierad e-postadress på ohsu.edu - Startsida
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Comprehensive single-cell transcriptional profiling of a multicellular organism
J Cao, JS Packer, V Ramani, DA Cusanovich, C Huynh, R Daza, X Qiu, ...
Science 357 (6352), 661-667, 2017
6672017
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
JN Burton, A Adey, RP Patwardhan, R Qiu, JO Kitzman, J Shendure
Nature biotechnology 31 (12), 1119-1125, 2013
6672013
Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing
DA Cusanovich, R Daza, A Adey, HA Pliner, L Christiansen, ...
Science 348 (6237), 910-914, 2015
6512015
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
A Adey, HG Morrison, X Xun, JO Kitzman, EH Turner, B Stackhouse, ...
Genome biology 11 (12), 1-17, 2010
4512010
Decoding long nanopore sequencing reads of natural DNA
AH Laszlo, IM Derrington, BC Ross, H Brinkerhoff, A Adey, IC Nova, ...
Nature biotechnology 32 (8), 829-833, 2014
3502014
Joint profiling of chromatin accessibility and gene expression in thousands of single cells
J Cao, DA Cusanovich, V Ramani, D Aghamirzaie, HA Pliner, AJ Hill, ...
Science 361 (6409), 1380-1385, 2018
3252018
The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line
A Adey, JN Burton, JO Kitzman, JB Hiatt, AP Lewis, BK Martin, R Qiu, ...
Nature 500 (7461), 207-211, 2013
3082013
Haplotype-resolved genome sequencing of a Gujarati Indian individual
JO Kitzman, AP MacKenzie, A Adey, JB Hiatt, RP Patwardhan, ...
Nature biotechnology 29 (1), 59-63, 2011
2662011
Validation and implementation of targeted capture and sequencing for the detection of actionable mutation, copy number variation, and gene rearrangement in clinical cancer …
CC Pritchard, SJ Salipante, K Koehler, C Smith, S Scroggins, B Wood, ...
The Journal of Molecular Diagnostics 16 (1), 56-67, 2014
2322014
Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing
S Amini, D Pushkarev, L Christiansen, E Kostem, T Royce, C Turk, ...
Nature genetics 46 (12), 1343-1349, 2014
2272014
Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data
HA Pliner, JS Packer, JL McFaline-Figueroa, DA Cusanovich, RM Daza, ...
Molecular cell 71 (5), 858-871. e8, 2018
2082018
megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering
S Boissel, J Jarjour, A Astrakhan, A Adey, A Gouble, P Duchateau, ...
Nucleic acids research 42 (4), 2591-2601, 2014
1962014
Sequencing thousands of single-cell genomes with combinatorial indexing
SA Vitak, KA Torkenczy, JL Rosenkrantz, AJ Fields, L Christiansen, ...
Nature methods 14 (3), 302-308, 2017
1642017
Haplotype-resolved genome sequencing: experimental methods and applications
MW Snyder, A Adey, JO Kitzman, J Shendure
Nature Reviews Genetics 16 (6), 344-358, 2015
1522015
Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing
A Adey, J Shendure
Genome research 22 (6), 1139-1143, 2012
1182012
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity
A Adey, JO Kitzman, JN Burton, R Daza, A Kumar, L Christiansen, ...
Genome research 24 (12), 2041-2049, 2014
1162014
Massively parallel contiguity mapping
JA Shendure, JJ Schwartz, AC Adey, CI Lee, JB Hiatt, JO Kitzman, ...
US Patent 10,457,936, 2019
1092019
Highly scalable generation of DNA methylation profiles in single cells
RM Mulqueen, D Pokholok, SJ Norberg, KA Torkenczy, AJ Fields, D Sun, ...
Nature biotechnology 36 (5), 428-431, 2018
1082018
Tagmentation-based whole-genome bisulfite sequencing
Q Wang, L Gu, A Adey, B Radlwimmer, W Wang, V Hovestadt, M Bähr, ...
Nature protocols 8 (10), 2022-2032, 2013
1042013
The Human Tumor Atlas Network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
1032020
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