Anshul Kundaje
Anshul Kundaje
Assistant Professor, Dept. of Genetics, Dept. of Computer Science, Stanford University
Verified email at stanford.edu - Homepage
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
EP Consortium
Nature 489 (7414), 57–74, 2012
122272012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
41442015
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
16622012
Learning important features through propagating activation differences
A Shrikumar, P Greenside, A Kundaje
International Conference on Machine Learning, 3145-3153, 2017
1522*2017
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
14502012
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
13922014
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
12492011
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of The Royal Society Interface 15 (141), 20170387, 2018
9162018
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ...
Genome research 22 (9), 1798-1812, 2012
8922012
Linking disease associations with regulatory information in the human genome
MA Schaub, AP Boyle, A Kundaje, S Batzoglou, M Snyder
Genome research 22 (9), 1748-1759, 2012
7292012
Defining functional DNA elements in the human genome
M Kellis, B Wold, MP Snyder, BE Bernstein, A Kundaje, GK Marinov, ...
Proceedings of the National Academy of Sciences 111 (17), 6131-6138, 2014
6912014
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
MR Corces, AE Trevino, EG Hamilton, PG Greenside, ...
Nature methods 14 (10), 959-962, 2017
6552017
Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution
MR Corces, JD Buenrostro, B Wu, PG Greenside, SM Chan, JL Koenig, ...
Nature genetics 48 (10), 1193-1203, 2016
6152016
Integrative annotation of chromatin elements from ENCODE data
MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ...
Nucleic acids research 41 (2), 827-841, 2013
5112013
Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers
S Onengut-Gumuscu, WM Chen, O Burren, NJ Cooper, AR Quinlan, ...
Nature genetics 47 (4), 381-386, 2015
4482015
Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease
E Gjoneska, AR Pfenning, H Mathys, G Quon, A Kundaje, LH Tsai, ...
Nature 518 (7539), 365-369, 2015
4442015
Long noncoding RNAs are rarely translated in two human cell lines
B Bánfai, H Jia, J Khatun, E Wood, B Risk, WE Gundling, A Kundaje, ...
Genome research 22 (9), 1646-1657, 2012
3832012
Extensive variation in chromatin states across humans
M Kasowski, S Kyriazopoulou-Panagiotopoulou, F Grubert, JB Zaugg, ...
Science 342 (6159), 750-752, 2013
3562013
H3K4me3 breadth is linked to cell identity and transcriptional consistency
BA Benayoun, EA Pollina, D Ucar, S Mahmoudi, K Karra, ED Wong, ...
Cell 158 (3), 673-688, 2014
3312014
Comparative analysis of metazoan chromatin organization
JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ...
Nature 512 (7515), 449-452, 2014
3222014
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