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Shaofei Ji
Shaofei Ji
Johnson & Johnson Innovative Medicine
Verified email at alumni.umn.edu - Homepage
Title
Cited by
Cited by
Year
DNA–protein cross-links: formation, structural identities, and biological outcomes
NY Tretyakova, A Groehler IV, S Ji
Accounts of chemical research 48 (6), 1631-1644, 2015
1952015
Reversible DNA–Protein Cross‐Linking at Epigenetic DNA Marks
S Ji, H Shao, Q Han, CL Seiler, NY Tretyakova
Angewandte Chemie International Edition 56 (45), 14130-14134, 2017
852017
5-Formylcytosine mediated DNA–protein cross-links block DNA replication and induce mutations in human cells
S Ji, I Fu, S Naldiga, H Shao, AK Basu, S Broyde, NY Tretyakova
Nucleic acids research 46 (13), 6455-6469, 2018
422018
Bypass of DNA-protein cross-links conjugated to the 7-deazaguanine position of DNA by translesion synthesis polymerases
S Wickramaratne, S Ji, S Mukherjee, Y Su, MG Pence, L Lior-Hoffmann, ...
Journal of Biological Chemistry 291 (45), 23589-23603, 2016
412016
Mutagenicity of a model DNA-peptide cross-link in human cells: roles of translesion synthesis DNA polymerases
P Pande, S Ji, S Mukherjee, OD Schärer, NY Tretyakova, AK Basu
Chemical research in toxicology 30 (2), 669-677, 2017
312017
Transcriptional bypass of DNA–protein and DNA–peptide conjugates by T7 RNA polymerase
S Ji, J Thomforde, C Rogers, I Fu, S Broyde, NY Tretyakova
ACS chemical biology 14 (12), 2564-2575, 2019
242019
Error-prone replication of a 5-formylcytosine-mediated DNA-peptide cross-link in human cells
S Naldiga, S Ji, J Thomforde, CM Nicolae, M Lee, Z Zhang, GL Moldovan, ...
Journal of Biological Chemistry 294 (27), 10619-10627, 2019
232019
5-Formylcytosine-induced DNA–peptide cross-links reduce transcription efficiency, but do not cause transcription errors in human cells
S Ji, D Park, K Kropachev, M Kolbanovskiy, I Fu, S Broyde, M Essawy, ...
Journal of Biological Chemistry 294 (48), 18387-18397, 2019
212019
Site-specific cross-linking of proteins to DNA via a new bioorthogonal approach employing oxime ligation
SS Pujari, Y Zhang, S Ji, MD Distefano, NY Tretyakova
Chemical communications 54 (49), 6296-6299, 2018
192018
An integrated strategy for assessing the metabolic stability and biotransformation of macrocyclic peptides in drug discovery toward oral delivery
Y Guo, S Ji, W Wang, S Wong, CW Yen, C Hu, DH Leung, E Plise, ...
Analytical Chemistry 94 (4), 2032-2041, 2022
82022
Base Excision Repair of N6-Deoxyadenosine Adducts of 1,3-Butadiene
S Wickramaratne, DM Banda, S Ji, AH Manlove, B Malayappan, ...
Biochemistry 55 (43), 6070-6081, 2016
72016
Ubiquitin signaling and the proteasome drive human DNA–protein crosslink repair
M Essawy, L Chesner, D Alshareef, S Ji, N Tretyakova, C Campbell
Nucleic acids research 51 (22), 12174-12184, 2023
62023
Oriented mesoporous TiO 2 film as photoanode for dye-sensitized solar cells
W Cheng, W Li, S Ji, D Yang, L Wang, X Qu, C Zhang, F Liang, Q Wang, ...
Journal of materials chemistry A 1 (27), 8023-8028, 2013
52013
Spin-canting and weak ferromagnetism in two novel 1D alternating chains with single cis-end-to-end azido bridges
HL Sun, J Xiong, SF Ji, X Zhen, L Jia, T Liu
Science China Chemistry 55, 1031-1036, 2012
42012
Evaluating the use of locked nucleic acid capture probes in hybrid LC–MS/MS analysis of siRNA analytes
K Agrawal, L Kang, S Ji, J Tena, W Jian
Bioanalysis 15 (18), 1129-1146, 2023
22023
Chemistry and Biology of DNA-Protein Cross-Links
S Ji
University of Minnesota, 2019
12019
Translesion synthesis past DNA-peptide crosslinks is dependent on local DNA sequence context
J Thomforde, S Ji, S Naldiga, S Pujari, A Basu, N Treakova
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 258, 2019
2019
Polymerase bypass of DNA-protein and DNA-peptide cross-links
S Ji, O Scharer, N Tretyakova
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017
2017
Versatile method to construct model DNA-protein cross-links (DPCs)
S Pujari, M Zhang, S Ji, M Distefano, N Tretyakova
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017
2017
Effect of DNA-protein cross-links on transcription
S Ji, N Tretyakova
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 252, 2016
2016
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