| Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis M Dasgupta, D Budday, SHP De Oliveira, P Madzelan, ... Proceedings of the National Academy of Sciences 116 (51), 25634-25640, 2019 | 61 | 2019 |
| Geometric analysis characterizes molecular rigidity in generic and non-generic protein configurations D Budday, S Leyendecker, H van den Bedem Journal of the Mechanics and Physics of Solids 83, 36-47, 2015 | 24 | 2015 |
| Memory-based meso-scale modeling of Covid-19: County-resolved timelines in Germany A Kergaßner, C Burkhardt, D Lippold, M Kergaßner, L Pflug, D Budday, ... Computational mechanics 66, 1069-1079, 2020 | 20 | 2020 |
| Meso-scale modeling of COVID-19 spatio-temporal outbreak dynamics in Germany A Kergaßner, C Burkhardt, D Lippold, S Nistler, M Kergaßner, ... MedRxiv, 2020.06. 10.20126771, 2020 | 17 | 2020 |
| Kinematic flexibility analysis: Hydrogen bonding patterns impart a spatial hierarchy of protein motion D Budday, S Leyendecker, H Van Den Bedem Journal of chemical information and modeling 58 (10), 2108-2122, 2018 | 13 | 2018 |
| Spatiotemporal modeling of first and second wave outbreak dynamics of COVID-19 in Germany D Lippold, A Kergaßner, C Burkhardt, M Kergaßner, J Loos, S Nistler, ... Biomechanics and modeling in mechanobiology, 1-15, 2021 | 11 | 2021 |
| Frustration‐guided motion planning reveals conformational transitions in proteins D Budday, R Fonseca, S Leyendecker, H van den Bedem Proteins: Structure, Function, and Bioinformatics 85 (10), 1795-1807, 2017 | 11 | 2017 |
| Collision‐free poisson motion planning in ultra high‐dimensional molecular conformation spaces R Fonseca, D Budday, H van den Bedem Journal of Computational Chemistry 39 (12), 711-720, 2018 | 10 | 2018 |
| Fast, clash-free RNA conformational morphing using molecular junctions A Héliou, D Budday, R Fonseca, H van den Bedem Bioinformatics 33 (14), 2114-2122, 2017 | 9 | 2017 |
| Stability and robustness of a 3D SLIP model for walking using lateral leg placement control D Budday, F Bauer, J Seipel International Design Engineering Technical Conferences and Computers and …, 2012 | 6 | 2012 |
| Cysteine modification can gate non-equilibrium conformational dynamics during enzyme catalysis M DasGupta, D Budday, P Madzelan, J Seravalli, B Hayes, RG Sierra, ... bioRxiv, 524751, 2019 | 3 | 2019 |
| Safe operation of a multi-axis kinematic system M Walter, D Budday, M Le, S Burmeister, A Stein US Patent App. 17/691,568, 2022 | 1 | 2022 |
| High-Dimensional Robotics at the Nanoscale–Kino-Geometric Modeling of Proteins and Molecular Mechanisms D Budday | 1 | 2019 |
| Safe operation of a multi-axis kinematic system M Walter, D Budday, M Le, A Stein, S Burmeister US Patent 11,927,936, 2024 | | 2024 |
| Projecting safety-related monitoring for a multi-axis kinematic system with multiple movable segments D Budday, M Walter US Patent App. 18/097,628, 2023 | | 2023 |
| Meso-scale modeling of COVID-19 spatio-temporal outbreak dynamics in Germany (preprint) A Kergassner, C Burkhardt, D Lippold, S Nistler, M Kergassner, ... | | 2020 |
| Kino‐Geometric Modeling: Insights into Protein Molecular Mechanisms D Budday, S Leyendecker, H van den Bedem PAMM 19 (1), e201900448, 2019 | | 2019 |
| Bridging protein rigidity theory and normal modes using kino‐geometric analysis with hierarchical constraint relaxation D Budday, S Leyendecker, H van den Bedem PAMM 18 (1), e201800251, 2018 | | 2018 |
| A geometric approach to characterize rigidity in proteins D Budday, S Leyendecker, H van den Bedem PAMM 15 (1), 89-90, 2015 | | 2015 |
| Transitions In Proteins D Budday, R Fonseca, S Leyendecker, H van den Bedem | | |
Henry van den BedemSVP ML Research & Cheminformatics, Atomwise Inc. and Dept of BTS, UCSFVerifierad e-postadress på ucsf.edu
