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Altuna Akalin
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methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
A Akalin, M Kormaksson, S Li, FE Garrett-Bakelman, ME Figueroa, ...
Genome biology 13 (10), 1-9, 2012
12492012
An atlas of combinatorial transcriptional regulation in mouse and man
T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ...
Cell 140 (5), 744-752, 2010
7512010
Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation
T Baubec, DF Colombo, C Wirbelauer, J Schmidt, L Burger, AR Krebs, ...
Nature 520 (7546), 243-247, 2015
5422015
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
Nature genetics 41 (5), 553-562, 2009
4632009
Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
H Kikuta, M Laplante, P Navratilova, AZ Komisarczuk, PG Engström, ...
Genome research 17 (5), 545-555, 2007
3612007
Complex loci in human and mouse genomes
PG Engström, H Suzuki, N Ninomiya, A Akalin, L Sessa, G Lavorgna, ...
PLoS genetics 2 (4), e47, 2006
3372006
Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia
A Akalin, FE Garrett-Bakelman, M Kormaksson, J Busuttil, L Zhang, ...
PLoS genetics 8 (6), e1002781, 2012
3042012
Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages
K Schroder, KM Irvine, MS Taylor, NJ Bokil, KA Le Cao, KA Masterman, ...
Proceedings of the National Academy of Sciences 109 (16), E944-E953, 2012
2882012
DNA Hydroxymethylation Profiling Reveals that WT1 Mutations Result in Loss of TET2 Function in Acute Myeloid Leukemia
R Rampal, A Akalin, J Madzo, A Vasanthakumar, E Pronier, J Patel, Y Li, ...
Cell Reports, 2014
2532014
Genomation: a toolkit to summarize, annotate and visualize genomic intervals
A Akalin, V Franke, K Vlahoviček, CE Mason, D Schübeler
Bioinformatics 31 (7), 1127-1129, 2015
1912015
Zebrafish enhancer detection (ZED) vector: A new tool to facilitate transgenesis and the functional analysis of cis‐regulatory regions in zebrafish
J Bessa, JJ Tena, E de la Calle‐Mustienes, A Fernández‐Miñán, ...
Developmental dynamics: an official publication of the American Association …, 2009
1722009
RNA localization is a key determinant of neurite-enriched proteome
A Zappulo, D Van Den Bruck, C Ciolli Mattioli, V Franke, K Imami, ...
Nature communications 8 (1), 1-13, 2017
1662017
Two independent transcription initiation codes overlap on vertebrate core promoters
V Haberle, N Li, Y Hadzhiev, C Plessy, C Previti, C Nepal, J Gehrig, ...
Nature 507 (7492), 381-385, 2014
1662014
Induction of sarcomas by mutant IDH2
C Lu, S Venneti, A Akalin, F Fang, PS Ward, RG DeMatteo, AM Intlekofer, ...
Genes & development 27 (18), 1986-1998, 2013
1472013
DoRiNA 2.0—upgrading the doRiNA database of RNA interactions in post-transcriptional regulation
K Blin, C Dieterich, R Wurmus, N Rajewsky, M Landthaler, A Akalin
Nucleic acids research 43 (D1), D160-D167, 2015
1202015
Strategies for analyzing bisulfite sequencing data
K Wreczycka, A Gosdschan, D Yusuf, B Grüning, Y Assenov, A Akalin
Journal of biotechnology 261, 105-115, 2017
1122017
Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis
C Nepal, Y Hadzhiev, C Previti, V Haberle, N Li, H Takahashi, ...
Genome research 23 (11), 1938-1950, 2013
1122013
Transcriptional features of genomic regulatory blocks
A Akalin, D Fredman, E Arner, X Dong, JC Bryne, H Suzuki, CO Daub, ...
Genome biology 10 (4), 1-13, 2009
1082009
An optimized algorithm for detecting and annotating regional differential methylation
S Li, FE Garrett-Bakelman, A Akalin, P Zumbo, R Levine, BL To, ID Lewis, ...
BMC bioinformatics 14 (5), 1-9, 2013
1012013
Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy
E Wyler, K Mösbauer, V Franke, A Diag, LT Gottula, R Arsiè, F Klironomos, ...
IScience 24 (3), 102151, 2021
872021
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