Shaojie Zhang
Title
Cited by
Cited by
Year
Multicolor CRISPR labeling of chromosomal loci in human cells
H Ma, A Naseri, P Reyes-Gutierrez, SA Wolfe, S Zhang, T Pederson
Proceedings of the National Academy of Sciences 112 (10), 3002-3007, 2015
2632015
Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow
H Ma, LC Tu, A Naseri, M Huisman, S Zhang, D Grunwald, T Pederson
Nature biotechnology 34 (5), 528, 2016
2002016
Epigenetic regulation of microRNA‐375 and its role in melanoma development in humans
J Mazar, D DeBlasio, SS Govindarajan, S Zhang, RJ Perera
FEBS letters 585 (15), 2467-2476, 2011
1012011
Epigenetic regulation of microRNA genes and the role of miR-34b in cell invasion and motility in human melanoma
J Mazar, D Khaitan, D DeBlasio, C Zhong, SS Govindarajan, S Kopanathi, ...
PloS one 6 (9), 2011
812011
Searching genomes for noncoding RNA using FastR
S Zhang, B Haas, E Eskin, V Bafna
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (4), 366-379, 2005
722005
CRISPR-Cas9 nuclear dynamics and target recognition in living cells
H Ma, LC Tu, A Naseri, M Huisman, S Zhang, D Grunwald, T Pederson
Journal of Cell Biology 214 (5), 529-537, 2016
682016
Consensus folding of unaligned RNA sequences revisited
V Bafna, H Tang, S Zhang
Journal of computational biology 13 (2), 283-295, 2006
502006
A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements
S Zhang, I Borovok, Y Aharonowitz, R Sharan, V Bafna
Bioinformatics 22 (14), e557-e565, 2006
442006
FastR: Fast database search tool for non-coding RNA
V Bafna, S Zhang
Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004 …, 2004
442004
RNAMotifScan: automatic identification of RNA structural motifs using secondary structural alignment
C Zhong, H Tang, S Zhang
Nucleic acids research 38 (18), e176-e176, 2010
392010
Structural alignment of pseudoknotted RNA
B Han, B Dost, V Bafna, S Zhang
Journal of Computational Biology 15 (5), 489-504, 2008
392008
Cas9 effector-mediated regulation of transcription, differentiation and gene editing/labeling
SA Wolfe, H Ma, T Pederson, MSK Enuameh, NA Kearns, RMJ Genga, ...
US Patent App. 14/571,818, 2015
332015
FIGHT-metric: Functional identification of gate-level hardware trustworthiness
D Sullivan, J Biggers, G Zhu, S Zhang, Y Jin
Proceedings of the 51st Annual Design Automation Conference, 1-4, 2014
332014
Netlist reverse engineering for high-level functionality reconstruction
T Meade, S Zhang, Y Jin
2016 21st Asia and South Pacific Design Automation Conference (ASP-DAC), 655-660, 2016
312016
Detecting transcription of ribosomal protein pseudogenes in diverse human tissues from RNA-seq data
P Tonner, V Srinivasasainagendra, S Zhang, D Zhi
BMC genomics 13 (1), 412, 2012
312012
Computational analysis of RNA structures with chemical probing data
P Ge, S Zhang
Methods 79, 60-66, 2015
272015
CRISPR-Sirius: RNA scaffolds for signal amplification in genome imaging
H Ma, LC Tu, A Naseri, YC Chung, D Grunwald, S Zhang, T Pederson
Nature methods 15 (11), 928-931, 2018
242018
Revisit Sequential Logic Obfuscation: Attacks and Defenses
T Meade, Z Zhao, S Zhang, D Pan, Y Jin
IEEE International Symposium on Circuits and Systems (ISCAS), 2017
232017
Clustering RNA structural motifs in ribosomal RNAs using secondary structural alignment
C Zhong, S Zhang
Nucleic acids research 40 (3), 1307-1317, 2012
232012
Finding stable local optimal RNA secondary structures
Y Li, S Zhang
Bioinformatics 27 (21), 2994-3001, 2011
232011
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