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Charles D. Johnson
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The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements
Nature biotechnology 24 (9), 1151-1161, 2006
23612006
The let-7 microRNA represses cell proliferation pathways in human cells
CD Johnson, A Esquela-Kerscher, G Stefani, M Byrom, K Kelnar, ...
Cancer research 67 (16), 7713-7722, 2007
14812007
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
Nature biotechnology 28 (8), 827-838, 2010
8012010
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
Nature biotechnology 32 (9), 903-914, 2014
7542014
Genome-scale microRNA and small interfering RNA screens identify small RNA modulators of TRAIL-induced apoptosis pathway
D Ovcharenko, K Kelnar, C Johnson, N Leng, D Brown
Cancer research 67 (22), 10782-10788, 2007
2692007
Using RNA sample titrations to assess microarray platform performance and normalization techniques
R Shippy, S Fulmer-Smentek, RV Jensen, WD Jones, PK Wolber, ...
Nature biotechnology 24 (9), 1123-1131, 2006
2042006
Nitrogen and potassium fertility affects Jalapeño pepper plant growth, pod yield, and pungency
CD Johnson, DR Decoteau
HortScience 31 (7), 1119-1123, 1996
1701996
Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens
Y Wang, N Ghaffari, CD Johnson, UM Braga-Neto, H Wang, R Chen, ...
BMC bioinformatics 12 (10), 1-7, 2011
1532011
MIR-15, MIR-26, MIR-31, MIR-145, MIR-147, MIR-188, MIR-215, MIR-216 MIR-331, MMU-MIR-292-3P REGULATED GENES AND PATHWAYS AS TARGETS FOR THERAPEUTIC INTERVENTION
A BADER, M BYROM, C JOHNSON, D BROWN, L PATRAWALA, ...
WO Patent 2,008,036,776, 2008
1172008
Analyzing Micro‐RNA Expression Using Microarrays
TS Davison, CD Johnson, BF Andruss
Methods in enzymology 411, 14-34, 2006
1132006
Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture
N Ghaffari, A Sanchez-Flores, R Doan, KD Garcia-Orozco, PL Chen, ...
Scientific reports 4 (1), 1-10, 2014
972014
Genomic signal processing and statistics
ER Dougherty, I Shmulevich
Hindawi Publishing Corporation, 2005
972005
MiR-124 regulated genes and pathways as targets for therapeutic intervention
AG Bader, JF Wiggins, L Patrawala, K Kelnar, M Byrom, D Brown
US Patent 8,071,562, 2011
862011
Toxicogenomic Profile of 2,3,7,8-Tetrachlorodibenzo-p-Dioxin in the Murine Fetal Heart: Modulation of Cell Cycle and Extracellular Matrix Genes
EA Thackaberry, Z Jiang, CD Johnson, KS Ramos, MK Walker
Toxicological Sciences 88 (1), 231-241, 2005
832005
Whole-Genome Sequencing and Genetic Variant Analysis of a Quarter Horse Mare
R Doan, ND Cohen, J Sawyer, N Ghaffari, CD Johnson, SV Dindot
BMC genomics 13 (1), 78, 2012
812012
mir-21 Regulated genes and pathways as targets for therapeutic intervention
AG Bader, M Byrom, CD Johnson, D Brown
US Patent App. 12/120,388, 2009
812009
Modulation of RNA polymerase II phosphorylation downstream of pathogen perception orchestrates plant immunity
F Li, C Cheng, F Cui, MVV de Oliveira, X Yu, X Meng, AC Intorne, ...
Cell host & microbe 16 (6), 748-758, 2014
772014
Mir-34 regulated genes and pathways as targets for therapeutic intervention
AG Bader, L Patrawala, JF Wiggins, MW Byrom, CD Johnson, D Brown
US Patent App. 12/134,932, 2009
722009
Mir-16 regulated genes and pathways as targets for therapeutic intervention
MW Byrom, L Patrawala, CD Johnson, D Brown, AG Bader
US Patent App. 11/967,663, 2009
692009
miR-200 REGULATED GENES AND PATHWAYS AS TARGETS FOR THERAPEUTIC INTERVENTION
AG Bader, MW Byrom, CD Johnson, D Brown
US Patent App. 12/124,394, 2009
652009
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