Min-yi Shen
Min-yi Shen
Verifierad e-postadress på cisco.com
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Comparative protein structure modeling using Modeller
N Eswar, B Webb, MA Marti‐Renom, MS Madhusudhan, D Eramian, ...
Current protocols in bioinformatics 15 (1), 5.6. 1-5.6. 30, 2006
Statistical potential for assessment and prediction of protein structures
M Shen, A Sali
Protein science 15 (11), 2507-2524, 2006
Comparative protein structure modeling using MODELLER
N Eswar, B Webb, MA Marti‐Renom, MS Madhusudhan, D Eramian, ...
Current protocols in protein science 50 (1), 2.9. 1-2.9. 31, 2007
Protein structure modeling with MODELLER
N Eswar, D Eramian, B Webb, MY Shen, A Sali
Structural proteomics, 145-159, 2008
MODBASE: a database of annotated comparative protein structure models and associated resources
U Pieper, N Eswar, FP Davis, H Braberg, MS Madhusudhan, A Rossi, ...
Nucleic acids research 34 (suppl_1), D291-D295, 2006
Current protocols in bioinformatics
N Eswar, MA Marti-Renom, B Webb, MS Madhusudhan, D Eramian, ...
Supplement 15 (5), 6, 2006
A composite score for predicting errors in protein structure models
D Eramian, M Shen, D Devos, F Melo, A Sali, MA Marti‐Renom
Protein Science 15 (7), 1653-1666, 2006
Long time dynamics of met-enkephalin: comparison of explicit and implicit solvent models
M Shen, KF Freed
Biophysical journal 82 (4), 1791-1808, 2002
Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides
MH Zaman, MY Shen, RS Berry, KF Freed, TR Sosnick
Journal of molecular biology 331 (3), 693-711, 2003
How well can the accuracy of comparative protein structure models be predicted?
D Eramian, N Eswar, MY Shen, A Sali
Protein Science 17 (11), 1881-1893, 2008
Current protocols in protein science
N Eswar, B Webb, MA Marti-Renom, MS Madhusudhan, D Eramian, ...
Current Protocols in Protein Science 50, 2.9, 2007
All‐atom fast protein folding simulations: The villin headpiece
M Shen, KF Freed
Proteins: Structure, Function, and Bioinformatics 49 (4), 439-445, 2002
Extended ab initio studies of the vinylidene–acetylene rearrangement
N Chang, M Shen, C Yu
The Journal of chemical physics 106 (8), 3237-3242, 1997
Protein complex compositions predicted by structural similarity
FP Davis, H Braberg, MY Shen, U Pieper, A Sali, MS Madhusudhan
Nucleic acids research 34 (10), 2943-2952, 2006
Large-scale context in protein folding: villin headpiece
A Fernández, M Shen, A Colubri, TR Sosnick, RS Berry, KF Freed
Biochemistry 42 (3), 664-671, 2003
The optimal size of a globular protein domain: A simple sphere-packing model
M Shen, FP Davis, A Sali
Chemical Physics Letters 405 (1-3), 224-228, 2005
MODELLER: a program for protein structure modeling release 9.12, r9480
A Šali
Rockefeller Univ, 779-815, 2013
Minimalist representations and the importance of nearest neighbor effects in protein folding simulations
A Colubri, AK Jha, M Shen, A Sali, RS Berry, TR Sosnick, KF Freed
Journal of molecular biology 363 (4), 835-857, 2006
Structural modeling of protein interactions by analogy: application to PSD-95
D Korkin, FP Davis, F Alber, T Luong, MY Shen, V Lucic, MB Kennedy, ...
PLoS Comput Biol 2 (11), e153, 2006
A simple topological representation of protein structure: implications for new, fast, and robust structural classification
DL Bostick, M Shen, II Vaisman
Proteins: Structure, Function, and Bioinformatics 56 (3), 487-501, 2004
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Artiklar 1–20