Qian Liu
Qian Liu
The Children’s Hospital of Philadelphia
Verifierad e-postadress på email.chop.edu
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Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data
Q Liu, L Fang, G Yu, D Wang, CL Xiao, K Wang
Nature communications 10 (1), 1-11, 2019
812019
‘Double water exclusion’: a hypothesis refining the O-ring theory for the hot spots at protein interfaces
J Li, Q Liu
Bioinformatics 25 (6), 743-750, 2009
622009
Interrogating the “unsequenceable” genomic trinucleotide repeat disorders by long-read sequencing
Q Liu, P Zhang, D Wang, W Gu, K Wang
Genome Medicine 9 (1), 65, 2017
502017
Binding Affinity Prediction for Protein–Ligand Complexes Based on β Contacts and B Factor
Q Liu, CK Kwoh, J Li
Journal of chemical information and modeling 53 (11), 3076-3085, 2013
402013
Long-read sequencing identified intronic repeat expansions in SAMD12 from Chinese pedigrees affected with familial cortical myoclonic tremor with epilepsy
S Zeng, M Zhang, X Wang, Z Hu, J Li, N Li, J Wang, F Liang, Q Yang, ...
Journal of medical genetics 56 (4), 265-270, 2019
362019
Use B-factor related features for accurate classification between protein binding interfaces and crystal packing contacts
Q Liu, Z Li, J Li
BMC bioinformatics 15 (16), 1-11, 2014
352014
Protein binding hot spots and the residue-residue pairing preference: a water exclusion perspective
Q Liu, J Li
BMC bioinformatics 11 (1), 244, 2010
302010
Improving keyword based web image search with visual feature distribution and term expansion
Z Gong, Q Liu
Knowledge and Information Systems 21 (1), 113-132, 2009
272009
Tertiary structure-based prediction of conformational B-cell epitopes through B factors
J Ren, Q Liu, J Ellis, J Li
Bioinformatics 30 (12), i264-i273, 2014
262014
Propensity vectors of low‐ASA residue pairs in the distinction of protein interactions
Q Liu, J Li
Proteins: Structure, Function, and Bioinformatics 78 (3), 589-602, 2010
252010
NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data
Q Liu, DC Georgieva, D Egli, K Wang
BMC genomics 20 (1), 31-42, 2019
232019
Positive-unlabeled learning for the prediction of conformational B-cell epitopes
J Ren, Q Liu, J Ellis, J Li
BMC bioinformatics 16 (S18), S12, 2015
222015
Connecting rules from paired miRNA and mRNA expression data sets of HCV patients to detect both inverse and positive regulatory relationships
R Song, Q Liu, T Liu, J Li
BMC genomics 16 (S2), S11, 2015
182015
Long-read sequence assembly of the firefly Pyrocoelia pectoralis genome
X Fu, J Li, Y Tian, W Quan, S Zhang, Q Liu, F Liang, X Zhu, L Zhang, ...
GigaScience 6 (12), gix112, 2017
162017
Rule discovery and distance separation to detect reliable miRNA biomarkers for the diagnosis of lung squamous cell carcinoma
R Song, Q Liu, G Hutvagner, H Nguyen, K Ramamohanarao, L Wong, J Li
BMC genomics 15 (S9), S16, 2014
142014
Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding?
Q Liu, SCH Hoi, CTT Su, Z Li, CK Kwoh, L Wong, J Li
Bioinformatics 27 (18), 2529-2536, 2011
112011
Detection of base analogs incorporated during DNA replication by nanopore sequencing
D Georgieva, Q Liu, K Wang, D Egli
Nucleic Acids Research, gkaa517, 2020
82020
iMEGES: integrated mental-disorder GEnome score by deep neural network for prioritizing the susceptibility genes for mental disorders in personal genomes
A Khan, Q Liu, K Wang
BMC bioinformatics 19 (17), 501, 2018
82018
Co-occurring atomic contacts for the characterization of protein binding hot spots
Q Liu, J Ren, J Song, J Li
PloS one 10 (12), e0144486, 2015
82015
Integrating water exclusion theory into β contacts to predict binding free energy changes and binding hot spots
Q Liu, SCH Hoi, CK Kwoh, L Wong, J Li
BMC bioinformatics 15 (1), 57, 2014
82014
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Artiklar 1–20