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Dave Bouvier
Dave Bouvier
Computational Scientist, Pennsylvania State University
Verified email at bx.psu.edu - Homepage
Title
Cited by
Cited by
Year
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Čech, ...
Nucleic acids research 44 (W1), W3-W10, 2016
53252016
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
7312018
HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies
SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ...
Molecular biology and evolution 37 (1), 295-299, 2020
3312020
Dissemination of scientific software with Galaxy ToolShed
D Blankenberg, G Von Kuster, E Bouvier, D Baker, E Afgan, N Stoler, ...
Genome biology 15, 1-3, 2014
2572014
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Nucleic Acids Research 50 (W1), W345-W351, 2022
2282022
StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo
Y Tang, E Bouvier, CK Kwok, Y Ding, A Nekrutenko, PC Bevilacqua, ...
Bioinformatics 31 (16), 2668-2675, 2015
542015
Bioconda: Sustainable and comprehensive software distribution for the life sciences
R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ...
Nature Methods 15 (7), 475-476, 2018
442018
No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics
D Baker, M Van Den Beek, D Blankenberg, D Bouvier, J Chilton, N Coraor, ...
PLoS pathogens 16 (8), e1008643, 2020
242020
Ready-to-use public infrastructure for global SARS-CoV-2 monitoring
W Maier, S Bray, M van den Beek, D Bouvier, N Coraor, M Miladi, B Singh, ...
Nature biotechnology 39 (10), 1178-1179, 2021
202021
Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring
W Maier, S Bray, M van den Beek, D Bouvier, N Coraor, M Miladi, B Singh, ...
BioRxiv, 2021
82021
Using Galaxy to Perform Large‐Scale Interactive Data Analyses—An Update
A Ostrovsky, J Hillman‐Jackson, D Bouvier, D Clements, E Afgan, ...
Current Protocols 1 (2), e31, 2021
42021
RASCL: Rapid Assessment of Selection in CLades through molecular sequence analysis
AG Lucaci, JD Zehr, SD Shank, D Bouvier, A Ostrovsky, H Mei, ...
Plos one 17 (11), e0275623, 2022
22022
RASCL: rapid assessment of SARS-CoV-2 clades through molecular sequence analysis
AG Lucaci, JD Zehr, SD Shank, D Bouvier, H Mei, A Nekrutenko, ...
BioRxiv, 2022
22022
Expanding the Galaxy’s reference data
N VijayKrishna, J Joshi, N Coraor, J Hillman-Jackson, D Bouvier, ...
Bioinformatics Advances 2 (1), vbac030, 2022
22022
Galaxy planemo 0.35. 0
J Chilton, P Cock, E Rasche, N Turaga, M Cech, B Grüning, N Soranzo, ...
Zenodo, 2016
12016
Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy
A Guerler, D Baker, M van den Beek, B Gruening, D Bouvier, N Coraor, ...
BMC bioinformatics 24 (1), 263, 2023
2023
RASCL: Rapid Assessment Of SARS-CoV-2 Clades Through Molecular Sequence Analysis (preprint)
AG Lucaci, JD Zehr, SD Shank, D Bouvier, H Mei, A Nekrutenko, ...
2022
Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring (preprint)
W Maier, S Bray, M van den Beek, D Bouvier, N Coraor, M Miladi, B Singh, ...
2021
Rapid molecular sequence characterization of the SARS-CoV-2 variant of interest Lambda (C. 37)
AG Lucaci, JD Zehr, SD Shank, S Weaver, D Bouvier, H Mei, ...
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Articles 1–19