Christoph Hafemeister
Christoph Hafemeister
Former Postdoctoral Research Associate, New York Genome Center
Verifierad e-postadress på nyu.edu
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Comprehensive integration of single-cell data
T Stuart, A Butler, P Hoffman, C Hafemeister, E Papalexi, WM Mauck III, ...
Cell 177 (7), 1888-1902. e21, 2019
17792019
Simultaneous epitope and transcriptome measurement in single cells
M Stoeckius, C Hafemeister, W Stephenson, B Houck-Loomis, ...
Nature methods 14 (9), 865-868, 2017
6752017
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
C Hafemeister, R Satija
Genome biology 20 (1), 1-15, 2019
3322019
Developmental diversification of cortical inhibitory interneurons
C Mayer, C Hafemeister, RC Bandler, R Machold, RB Brito, X Jaglin, ...
Nature 555 (7697), 457-462, 2018
2032018
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
1712016
Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks
A Greenfield, C Hafemeister, R Bonneau
Bioinformatics 29 (8), 1060-1067, 2013
1272013
An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network
ML Arrieta‐Ortiz, C Hafemeister, AR Bate, T Chu, A Greenfield, B Shuster, ...
Molecular systems biology 11 (11), 839, 2015
1262015
EGRINs (Environmental Gene Regulatory Influence Networks) in rice that function in the response to water deficit, high temperature, and agricultural environments
O Wilkins, C Hafemeister, A Plessis, MM Holloway-Phillips, GM Pham, ...
The Plant Cell 28 (10), 2365-2384, 2016
652016
Constrained mixture estimation for analysis and robust classification of clinical time series
IG Costa, A Schönhuth, C Hafemeister, A Schliep
Bioinformatics 25 (12), i6-i14, 2009
432009
Multiple abiotic stimuli are integrated in the regulation of rice gene expression under field conditions
A Plessis, C Hafemeister, O Wilkins, ZJ Gonzaga, RS Meyer, I Pires, ...
Elife 4, e08411, 2015
262015
Inferring differentiation pathways from gene expression
IG Costa, S Roepcke, C Hafemeister, A Schliep
Bioinformatics 24 (13), i156-i164, 2008
262008
Identification of global alteration of translational regulation in glioma in vivo
K Helmy, J Halliday, E Fomchenko, M Setty, K Pitter, C Hafemeister, ...
PloS one 7 (10), e46965, 2012
242012
Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions
C Hafemeister, IG Costa, A Schönhuth, A Schliep
Bioinformatics 27 (7), 946-952, 2011
232011
Large-scale simultaneous measurement of epitopes and transcriptomes in single cells
M Stoeckius, C Hafemeister, W Stephenson, B Houck-Loomis, ...
Nature methods 14 (9), 865, 2017
152017
A community challenge for inferring genetic predictors of gene essentialities through analysis of a functional screen of cancer cell lines
M Gönen, BA Weir, GS Cowley, F Vazquez, Y Guan, A Jaiswal, ...
Cell systems 5 (5), 485-497. e3, 2017
142017
Genotet: An interactive web-based visual exploration framework to support validation of gene regulatory networks
B Yu, H Doraiswamy, X Chen, E Miraldi, ML Arrieta-Ortiz, C Hafemeister, ...
IEEE transactions on visualization and computer graphics 20 (12), 1903-1912, 2014
142014
Inter-species pathway perturbation prediction via data-driven detection of functional homology
C Hafemeister, R Romero, E Bilal, P Meyer, R Norel, K Rhrissorrakrai, ...
Bioinformatics 31 (4), 501-508, 2015
72015
Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis
I Mandric, T Schwarz, A Majumdar, K Hou, L Briscoe, R Perez, ...
Nature communications 11 (1), 1-9, 2020
62020
Selecting oligonucleotide probes for whole-genome tiling arrays with a cross-hybridization potential
C Hafemeister, R Krause, A Schliep
IEEE/ACM transactions on computational biology and bioinformatics 8 (6 …, 2011
52011
Predicting cellular position in the Drosophila embryo from Single-Cell Transcriptomics data
J Tanevski, T Nguyen, B Truong, N Karaiskos, ME Ahsen, X Zhang, C Shu, ...
BioRxiv, 796029, 2019
42019
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Artiklar 1–20