Precise quantification of translation inhibition by mRNA structures that overlap with the ribosomal footprint in N-terminal coding sequences A Espah Borujeni, D Cetnar, I Farasat, A Smith, N Lundgren, HM Salis Nucleic acids research 45 (9), 5437-5448, 2017 | 145 | 2017 |
Simultaneous repression of multiple bacterial genes using nonrepetitive extra-long sgRNA arrays AC Reis, SM Halper, GE Vezeau, DP Cetnar, A Hossain, PR Clauer, ... Nature biotechnology 37 (11), 1294-1301, 2019 | 127 | 2019 |
Automated design of thousands of nonrepetitive parts for engineering stable genetic systems A Hossain, E Lopez, SM Halper, DP Cetnar, AC Reis, D Strickland, ... Nature biotechnology 38 (12), 1466-1475, 2020 | 96 | 2020 |
Systematic Quantification of Sequence and Structural Determinants Controlling mRNA stability in Bacterial Operons DP Cetnar, HM Salis ACS Synthetic Biology 10 (2), 318-332, 2021 | 60 | 2021 |
Thermodynamics of the Electron Acceptors in Heliobacterium modesticaldum: An Exemplar of an Early Homodimeric Type I Photosynthetic Reaction Center B Ferlez, J Cowgill, W Dong, C Gisriel, S Lin, M Flores, K Walters, ... Biochemistry 55 (16), 2358-2370, 2016 | 27 | 2016 |
An automated pipeline for engineering many-enzyme pathways: computational sequence design, pathway expression-flux mapping, and scalable pathway optimization SM Halper, DP Cetnar, HM Salis Synthetic Metabolic Pathways: Methods and Protocols, 39-61, 2018 | 9 | 2018 |
Surrogate model to screen for inactivation‐based clearance of enveloped viruses during biotherapeutics process development H Feroz, D Cetnar, R Hewlett, S Sharma, M Holstein, S Ghose, ZJ Li Biotechnology Journal 16 (12), 2100176, 2021 | 5 | 2021 |
Systematic Quantification of Sequence and Structural Determinants Controlling mRNA stability in Bacterial Operons. ACS Synthetic Biology 10 (2): 318–332 DP Cetnar, HM Salis | 5 | 2021 |
Engineered CRISPR/Cas9 Systems for Simultaneous Long-term Regulation of Multiple Targets H Salis, A Reis, S Halper, P Clauer, GE Vezeau, DP Cetnar, A Hossain US Patent App. 17/633,321, 2022 | | 2022 |
Machine Learning-Evolved Biophysical Models for Engineering Genetic Circuits and Pathways HM Salis, TL LaFleur, A Hossain, AC Reis, SM Halper, GE Vezeau, ... | | 2022 |
Predicting Gene Expression For Robust Genetic System Design D Cetnar Pennsylvania State University, 2021 | | 2021 |
Establishing a surrogate model for inactivation of enveloped viruses to screen viral clearance conditions during biotherapeutics process development H Feroz, D Cetnar, R Hewlett, S Sharma, M Holstein, S Ghose, ZJ Li | | 2021 |
Predicting Coupled Expression Dynamics in Bacterial Operons D Cetnar, X Tang, HM Salis 2018 AIChE Annual Meeting, 2018 | | 2018 |